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b9d173a2c4
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checked combining_dfs.R for all targets
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2022-01-18 17:42:04 +00:00 |
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e2cdee2d08
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added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg
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2022-01-18 17:36:54 +00:00 |
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8f8a9db92c
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tried ED logo, but needs work
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2022-01-18 16:53:16 +00:00 |
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00094f036a
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playing with MSA plots to allow filtering of positions, arghhh
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2022-01-18 15:30:41 +00:00 |
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4e779b2945
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saving work
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2022-01-18 11:14:25 +00:00 |
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c8c4afb28a
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added logoP_msa.R
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2022-01-17 19:11:48 +00:00 |
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68a092037b
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finding seq discrepancy in MSA for embb
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2022-01-17 19:11:10 +00:00 |
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07aedfe286
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added both test logo plots in one script
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2022-01-16 15:00:54 +00:00 |
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efe6703673
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attempted omitting snp from logo plot for OR
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2022-01-16 14:45:39 +00:00 |
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1244581cdd
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just added some minor tweaks for the logo plots with OR
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2022-01-16 13:31:32 +00:00 |
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9546355241
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updated and tested logoP_snp.R. All done nicely
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2022-01-15 13:17:26 +00:00 |
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0334188801
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adde tests scripts for logoP and logoP_snp.R
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2022-01-14 16:10:49 +00:00 |
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f640087922
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added logoP_snp.R and renamed logo_plots_func.R to logoP.R
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2022-01-14 16:09:57 +00:00 |
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f27b536157
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added option to remove empty positions from logo plot
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2022-01-14 11:07:16 +00:00 |
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4e2f5f35db
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added log option to function properly
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2022-01-14 10:50:56 +00:00 |
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3b7cea3c47
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adding legend forlogo plot
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2022-01-14 10:18:01 +00:00 |
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426a5cb0b5
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added logo_plot function and test to check it
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2022-01-13 18:55:13 +00:00 |
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344a74a9e1
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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7cbd9b4996
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added barebone notes for logo_plots_func.R
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2022-01-12 17:59:02 +00:00 |
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3f7bc908ec
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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c48fa1dbb0
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minor tidy up to check interactive graphs Rshiny
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2022-01-07 16:07:44 +00:00 |
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3ab6a3dbc1
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added untracked files in scripts and dynamut
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2022-01-04 12:26:54 +00:00 |
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5cd6c300a7
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saving minor update to function fix
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2021-09-17 13:35:48 +01:00 |
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e115c3636c
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fixed lf_bp function with aes_string and reformulate
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2021-09-17 13:33:19 +01:00 |
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e2d7a6567e
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minor bug fixes to allow i_graps for stability to render correctly
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2021-09-16 18:59:02 +01:00 |
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51aa321792
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sorting out bp_subcolours in interaction
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2021-09-16 12:44:42 +01:00 |
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e8734b1c4b
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sorted merged_df2 and consequently others by position in combining_dfs_plotting.R
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2021-09-16 12:43:36 +01:00 |
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56600ac3f8
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added config/ with drug gene names
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2021-09-16 10:05:28 +01:00 |
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96e6e8db5d
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saving work and tidying script
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2021-09-15 19:37:39 +01:00 |
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f0e66b2f7b
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added the scratch script as _v2 to play while repurposing bp_subcolours.R
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2021-09-15 19:34:24 +01:00 |
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2ac5ec410e
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added test_bp_subcolours.R
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2021-09-15 19:33:52 +01:00 |
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7550efbd4c
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added wideplot subcols generation within bp_subcolours.R to make it easier to call the whole thing as a function and use merged_df3 to generate plot without having to separately generate special data for it. Tested with real data on different stability params
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2021-09-15 19:29:09 +01:00 |
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449af7acf4
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fixed pos_count cals in function by specifying dplyr and changed summarize to summarise
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2021-09-15 15:46:42 +01:00 |
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bf432cd054
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more updates to pairs_panels to take colnames for plotting
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2021-09-14 18:20:12 +01:00 |
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b98977336c
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updated my_pairs_panel.R to make the dots coloured
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2021-09-14 15:36:05 +01:00 |
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27f0b15d4c
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tidied script plotting_data.R by removing superceded code
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2021-09-10 18:19:56 +01:00 |
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3ddbee8c90
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finally moved foldx_outcome and deepddg_outcome calcs to combine_dfs.py in python script i.e cleaned source data
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2021-09-10 18:19:01 +01:00 |
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5c8a9e8f00
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sorted combining_dfs.py with all other data files and tidied up get_plotting_dfs.R
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2021-09-10 18:16:41 +01:00 |
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93038fa17c
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added lineage_dist.R nad renamed lineage_bp_data file to lineage_data
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2021-09-09 16:14:14 +01:00 |
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b7d50fbbcd
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added lineage_labels and mutation_info_labels to combinig_dfs_plotting
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2021-09-09 16:10:11 +01:00 |
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03031d2eb6
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moved all test scripts for functions to tests/
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2021-09-09 13:12:07 +01:00 |
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3cee341170
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replaced old lineage barplot with count and diversity combined plots sourced from function
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2021-09-07 09:27:47 +01:00 |
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50b89cdcd7
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one function with tuned params to generate count and diversity barplot
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2021-09-06 19:52:56 +01:00 |
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869fca7f94
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added function for generating lineage barplots and also test script along wiadding script for processing data and added it to get_plotting_dfs.R
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2021-09-06 19:50:50 +01:00 |
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605eb54526
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saving work for the day
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2021-09-02 17:40:24 +01:00 |
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fcb4b85747
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modified bp with option for adding stats and boxplplots. Moved old one to redundant
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2021-09-02 12:50:24 +01:00 |
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826d3c72b7
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added functions for bp with stat and tested them
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2021-08-27 14:05:00 +01:00 |
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edb409baef
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renamed dm_om barplot function scriptto lf_bp_stability.R
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2021-08-27 13:03:39 +01:00 |
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da9bb67706
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added function for stats from lf data
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2021-08-27 13:01:52 +01:00 |
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6e01ef22c0
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added stat_bp_stability.R which needs to be a function for generating stat plots
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2021-08-26 16:37:56 +01:00 |
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