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b2284f7216
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added base histogram script for af and or
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2020-10-13 13:38:17 +01:00 |
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1f9ea3f789
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added ns prefix to SNPs for unambiguity
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2020-10-13 13:37:22 +01:00 |
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59911687c8
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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2f1f02e1de
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renamed other_plots.R to other_plots_combined.R and changing labels to capital letters for journal
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2020-10-09 12:17:24 +01:00 |
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667804ad83
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saving work minor changes perhaps
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2020-10-08 16:03:12 +01:00 |
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7f5ca7f5a4
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added af and OR columns in the data
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2020-10-06 19:39:59 +01:00 |
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69f3629cc0
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indicated hardcoded active site residues for pnca
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2020-10-06 19:12:32 +01:00 |
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be50636b15
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script to subset data for dnds cals
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2020-10-06 19:11:34 +01:00 |
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4285bbd59f
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added barplot_subcolours_aa_combined.R to combine and label these plots
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2020-10-06 18:43:20 +01:00 |
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18b6407539
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adjusted x axis position label for barplot_subcols_aa_LIG.R
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2020-10-06 18:42:24 +01:00 |
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9784cba232
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generated labelled ps_plots_combined.R and capital "P" for position in barplots coloured aa for Lig
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2020-10-06 18:15:50 +01:00 |
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e60b4c5492
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output corr plots with coloured dots
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2020-10-06 17:47:24 +01:00 |
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9d2d6cfd84
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updated TASK in hist_af_or_combined.R
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2020-10-06 16:43:59 +01:00 |
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a549e52825
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renamed dist_plots.R to dist_plots_check.R as its exploratory
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2020-10-06 16:39:24 +01:00 |
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5f441d09d9
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added hist_af_or_combined.R to generate plots for output and moved previosu run to scratch_plots/
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2020-10-06 16:33:25 +01:00 |
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f240c969ec
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added hist_af.R
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2020-10-06 15:07:42 +01:00 |
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74c4ef16ae
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added basic_barplots_foldx.R for supp figure
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2020-10-06 09:53:34 +01:00 |
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4c345ea9f4
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moved not required plots to scratch
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2020-10-06 09:52:54 +01:00 |
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9597997741
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saving predictions script
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2020-09-30 14:09:08 +01:00 |
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8a6c7968f5
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added predictions for ps and lig and output to results
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2020-09-30 13:12:05 +01:00 |
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a77b472dfa
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added prediction.R to do logistic regression
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2020-09-30 10:04:49 +01:00 |
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d2093e7a4c
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added ../data_extraction_epistasis.py for getting list for epistasis work
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2020-09-29 16:09:54 +01:00 |
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81796df71a
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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c58fa8cd4d
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added dist_plot.R to generate plots for writing results
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2020-09-23 19:24:42 +01:00 |
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48050752db
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added more analysis in extreme_muts.R to be tidied later
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2020-09-23 19:23:34 +01:00 |
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a3aab4556a
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added fold and duet agreement to extreme_muts.R
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2020-09-23 11:20:22 +01:00 |
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6d08b646fc
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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5579e9527b
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updated extreme_muts.R with number of budding hotspots and mult muts numbers
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2020-09-23 11:02:13 +01:00 |
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2297617af2
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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be8fa7e639
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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edabe0d776
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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771995d1ab
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saving work
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2020-09-18 18:07:48 +01:00 |
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093ae0d832
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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369c906a33
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added ggcorr plots combined for all params
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2020-09-18 11:56:19 +01:00 |
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24b1cc2440
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saving work
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2020-09-18 11:55:08 +01:00 |
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5e1c920a0c
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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b8575c6e69
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logo_combined.R, outputs logo plot with multiple mutations and log_or
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2020-09-17 20:01:57 +01:00 |
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40e4ddd70a
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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8ddca4a8b1
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updated corr plots to show points with no colours
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2020-09-17 17:17:11 +01:00 |
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883207bc4b
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updated corr_PS_LIG.R to output both styles of corr plots
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2020-09-17 17:04:03 +01:00 |
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ea5d5bda44
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renamed corr_plot scripts
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2020-09-17 16:38:40 +01:00 |
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f0ee1ff6c9
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updated plot name in corr_plots_foldx.R
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2020-09-17 16:36:45 +01:00 |
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1b5280145b
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renamed file to denote corr adjusted and plain
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2020-09-17 16:35:35 +01:00 |
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fb0646373b
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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5f335a5051
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added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel
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2020-09-17 15:31:37 +01:00 |
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63e04ae600
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saving work
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2020-09-17 15:29:17 +01:00 |
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375cdc2068
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added new layput for dm_om and facet_lineage plot
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2020-09-17 14:01:04 +01:00 |
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a5b03e53e8
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updated with two outputs: labelled and unlabelled
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2020-09-16 15:37:56 +01:00 |
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351e472e73
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renaming and moving files
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2020-09-16 14:57:51 +01:00 |
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b36bfc9e9d
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renamed file in scratch plot/
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2020-09-16 14:53:53 +01:00 |
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