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f05cb96346
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added sections and slotted relevant bits from data_extraction to v2
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2022-04-14 12:21:16 +01:00 |
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6330a2e716
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added v2 for data extraction
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2022-04-14 10:16:12 +01:00 |
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2518556c96
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added str.strip() instead of str.lstrip()
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2022-04-08 17:05:24 +01:00 |
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3368e949e8
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bring in embb stuff which was in the wrong branch
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2021-10-28 11:18:13 +01:00 |
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7f2c1d7ed8
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took extra lines from data extraction
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2021-06-21 16:15:44 +01:00 |
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a67156bc87
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test2 bugfixes
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2021-02-08 15:24:22 +00:00 |
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073381e5a2
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updated results summary in the data_extraction.py
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2020-11-12 17:05:29 +00:00 |
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e67fbfd986
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handling missing dir for data_extraction.py
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2020-11-12 13:21:06 +00:00 |
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c7194b7423
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added what is required as a minimum to run data_extraction
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2020-11-06 19:04:27 +00:00 |
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8dbe532937
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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e4608342a4
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various changes
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2020-09-08 17:13:02 +01:00 |
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c48c5177ca
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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208e0b6f62
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sorted df by position for output in data_extraction
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2020-08-14 17:57:12 +01:00 |
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805868ce7e
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removed if clause for filenames
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2020-08-13 18:39:16 +01:00 |
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833e599550
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added output file for checking
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2020-08-11 18:34:02 +01:00 |
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6cedc3c14d
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refactoring or_kin script minor changes only
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2020-07-10 12:37:41 +01:00 |
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8931441fa5
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ran foldx and mcsm (get) for 33k dataset
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2020-07-08 20:30:32 +01:00 |
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172fa18420
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modified extraction to be explicit for extracting nsSNP for specified gene
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2020-07-08 18:47:22 +01:00 |
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436125745d
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minor changes in data extraction
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2020-07-08 16:01:54 +01:00 |
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65e6b28d9e
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data extraction tidy up
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2020-07-08 13:26:33 +01:00 |
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e4328df255
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saving work for the day
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2020-07-07 18:31:14 +01:00 |
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8f460347b4
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adding clean files for rerrun 35k dataset
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2020-07-07 18:28:55 +01:00 |
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e0ba3108f6
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added fixme: for some necessary required changes
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2020-07-02 14:16:40 +01:00 |
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2cebd338ba
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ran struc param analysis
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2020-06-17 19:36:02 +01:00 |
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96da4d8ed5
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inlcuded the revised master file for 35k isolates
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2020-06-16 11:39:11 +01:00 |
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ea213d09aa
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added pdb_chain splitter code and wrapper
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2020-05-13 16:54:20 +01:00 |
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5ac87e76c7
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adding commands for use of pdbtools
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2020-05-12 12:50:49 +01:00 |
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bc03aab82d
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add wrapper and mcsm library
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2020-04-16 17:45:24 +01:00 |
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95147b577c
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saving work for today
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2020-04-09 16:40:45 +01:00 |
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f42b6f725f
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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3905a81c38
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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