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3ac5ff7078
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added logo plot
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2020-09-10 19:56:33 +01:00 |
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61b91bccb4
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updated Header file with Logolas and ggseqlogo
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2020-09-10 19:55:21 +01:00 |
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96c95fb06c
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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0699ebfc3a
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saving work
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2020-09-10 19:16:24 +01:00 |
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14182df12f
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saving other_plots.R
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2020-09-10 17:53:49 +01:00 |
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c9040cad21
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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2540424308
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changes
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2020-09-10 16:06:14 +01:00 |
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8874f9911f
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saving work yet again to be extra sure
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2020-09-10 16:03:04 +01:00 |
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01273a8184
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saving recovered combining_dfs_plotting.R after editing
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2020-09-10 15:52:22 +01:00 |
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e023472091
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move combining_dfs_plotting.R
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2020-09-10 15:36:17 +01:00 |
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9da808680d
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re-adding deleted combining_dfs_plotting.R
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2020-09-10 15:28:10 +01:00 |
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315b350466
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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4cd6c2acd7
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added boxplots and stats for other numerical params
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2020-09-10 14:09:40 +01:00 |
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a04c3d6b0d
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saving work after correlation plots
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2020-09-09 20:56:07 +01:00 |
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9476fac83b
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added correlation plots
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2020-09-09 20:48:21 +01:00 |
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687d5613aa
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renamed file
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2020-09-09 19:11:06 +01:00 |
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464186f5bd
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regenerated combined_or figure with correct muts
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2020-09-09 19:03:52 +01:00 |
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41ff051dc9
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script to generate combined ps plot wit af and or
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2020-09-09 18:57:28 +01:00 |
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926fe37ac3
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saving work
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2020-09-09 18:56:59 +01:00 |
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ae760d193c
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renamed lineage_dist
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2020-09-09 17:34:32 +01:00 |
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6d50b961a5
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corrected subcols_axis name in sucols_all_PS
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2020-09-09 13:36:37 +01:00 |
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f7b55d035a
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lineage dist plots combined generated
Please enter the commit message for your changes. Lines starting
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2020-09-09 13:18:57 +01:00 |
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98cd8a74e8
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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af7c55b713
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plotting script with resolved gene metadata
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2020-09-09 12:00:42 +01:00 |
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3ebb0d8f06
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updated dir.R
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2020-09-09 11:45:09 +01:00 |
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8507d16b8b
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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8dbe532937
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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f10f8f6d2a
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changing category of ambiguous muts
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2020-09-08 18:51:03 +01:00 |
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e980085294
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outputting revised all params file
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2020-09-08 17:52:45 +01:00 |
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f7ab799f74
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hopefully finally sorted data merges!
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2020-09-08 17:46:52 +01:00 |
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e4608342a4
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various changes
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2020-09-08 17:13:02 +01:00 |
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c72269dcd1
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trying other num param plots
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2020-09-07 17:17:56 +01:00 |
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4bab45c634
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ks test script added
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2020-09-07 15:27:53 +01:00 |
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739e9eadf8
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Combining dfs for PS and lig in one
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2020-09-07 14:05:46 +01:00 |
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93e19e3186
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lineage barplot script
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2020-09-07 11:29:28 +01:00 |
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e0a9da9893
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updated giignore
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2020-09-04 22:46:07 +01:00 |
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95574d469b
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updated combining_two_df.R for plots
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2020-09-04 22:43:30 +01:00 |
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ef3a97d664
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script to plot lineage dist plots
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2020-09-04 22:40:49 +01:00 |
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5d0e2d94ce
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adding missing mutation col in combining_dfs
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2020-09-04 21:04:18 +01:00 |
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c48c5177ca
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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d6552628e4
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added running scripts doc
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2020-08-26 17:20:01 +01:00 |
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de14752a0c
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all barplots generated for ps and lig
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2020-08-26 17:18:45 +01:00 |
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8ee7d4234e
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reflected change in running_scripts doc
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2020-08-26 16:41:10 +01:00 |
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25ff220b1d
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renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
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2020-08-26 16:40:36 +01:00 |
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e0f14ed266
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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2e53c8007a
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generated subcolour bps for PS
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2020-08-26 12:45:09 +01:00 |
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7e0bddd7d2
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sourcing plotting_data for subcols_axis_PS
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2020-08-26 12:07:04 +01:00 |
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b5ad53f7d1
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added ligand df in plotting
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2020-08-26 10:02:44 +01:00 |
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1a00ab614f
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added instructions on running plot scripts
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2020-08-24 14:38:45 +01:00 |
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e696064d42
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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