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8d0bd8011f
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added depricated shell scripts
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2021-02-10 10:36:02 +00:00 |
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6103254442
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updated testing cmds for foldx
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2021-02-10 10:32:09 +00:00 |
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3280cdb2a1
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added test2/ for testing updated foldx script
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2021-02-10 10:16:28 +00:00 |
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4f25acfa35
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adding and saving files
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2021-02-09 18:30:47 +00:00 |
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2f0e508679
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add foldx5 wrapper
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2021-02-09 15:45:21 +00:00 |
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b5b54c7658
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dont break when the pdb file is in a weird place with a weird name
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2021-02-09 15:20:55 +00:00 |
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73b705a563
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check to handle missing I/O/P dirs if drug unset
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2021-02-09 15:00:03 +00:00 |
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0d2f5c55ef
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test2 runfoldx symlink
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2021-02-09 14:43:03 +00:00 |
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93f6707b8f
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various changes
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2021-02-09 14:42:44 +00:00 |
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80e00b0dfa
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renamed file runFoldx.py in test2/ to reflect this
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2021-02-09 10:54:35 +00:00 |
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f95f2a3c93
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remove shell scripts run with subprocess() and launch foldx directly from python
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2021-02-08 18:06:02 +00:00 |
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d4a7e3b635
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modifying script to avoid invoking bash as a subprocess
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2021-02-08 16:59:42 +00:00 |
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fab1fb0492
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more debug
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2021-02-08 16:16:53 +00:00 |
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c9698d7550
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fixup broken shell scripts
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2021-02-08 15:44:21 +00:00 |
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a67156bc87
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test2 bugfixes
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2021-02-08 15:24:22 +00:00 |
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4d03a43c4a
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added user defined option for processing dir to allow me to specify external storage device for running it
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2020-12-02 11:26:26 +00:00 |
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2911678177
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updating notes to running_scripts.py as running for another drug-target
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2020-11-17 13:55:16 +00:00 |
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8dc2fa7326
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fixed white space prob with mcsm input with merge
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2020-07-14 14:07:23 +01:00 |
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c0827b56cc
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finding discrepancy in merging or dfs,grrrr
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2020-07-13 18:31:29 +01:00 |
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08379c0def
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minor tidy up in foldx, mcsm and dssp scripts
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2020-07-09 14:04:16 +01:00 |
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6725f08829
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adding default dirs and filenames to argparse in foldx and mcsm
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2020-07-09 12:57:08 +01:00 |
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8931441fa5
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ran foldx and mcsm (get) for 33k dataset
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2020-07-08 20:30:32 +01:00 |
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973a1a33da
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refactor foldx pipeline to include:
* command-line args
* creating necessary dirs automagically
* code cleanup, syntax errors, etc etc
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2020-06-30 17:14:30 +01:00 |
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