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889bea1e63
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ran ml_iterator for actual genes
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2022-09-03 09:23:37 +01:00 |
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d77389acfc
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running combined model with FS
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2022-09-03 09:22:06 +01:00 |
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c7351970a2
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chmod
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2022-09-02 21:14:02 +01:00 |
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f9ce90e3f4
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saving
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2022-09-02 10:08:58 +01:00 |
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93e958ae6a
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now running for combined gene actual
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2022-09-02 10:04:27 +01:00 |
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c845d96102
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added combined_model_iterator.py that has oversampling
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2022-09-02 09:50:51 +01:00 |
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338dd329e9
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running ml_iterator_CV for all targets with different CV threholds
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2022-09-01 16:29:32 +01:00 |
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80b4a1850c
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tested to make sure the cols added dont break code
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2022-09-01 16:23:57 +01:00 |
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de9e6a709b
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added 3 cols for snp counts for ML
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2022-09-01 16:11:23 +01:00 |
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2bf91681b4
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preparing to rerun ML iterator
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2022-09-01 13:41:02 +01:00 |
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56b71c6ca2
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added avg affinity and stability cols with mask for avg affinity
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2022-09-01 13:04:37 +01:00 |
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e03ce277b7
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checked masked cols after running
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2022-09-01 12:57:38 +01:00 |
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f9129b9ebc
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added nca dist criteria for masking
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2022-09-01 12:55:38 +01:00 |
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f94eadf1d4
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added
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2022-09-01 12:54:41 +01:00 |
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82e2da4f3b
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ml df stuff
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2022-09-01 11:39:11 +01:00 |
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26f284d76e
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added test_func_combined.py
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2022-07-29 00:14:39 +01:00 |
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9cd6613da6
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added cm_logo_skf_v2.py
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2022-07-29 00:13:54 +01:00 |
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e55906d2c7
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saving work
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2022-07-29 00:12:43 +01:00 |
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1695e90b42
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running none_complete with diff cv threhsolds
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2022-07-28 15:33:43 +01:00 |
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85f59155fa
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uncommented all models for a full run
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2022-07-28 15:28:31 +01:00 |
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37f5199c5c
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added the cm_ml_iterator_TODO.py for later
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2022-07-28 15:25:31 +01:00 |
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e32308d984
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moved old logs
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2022-07-28 15:24:49 +01:00 |
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fd0ccc9032
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added genes_ml_logs
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2022-07-28 15:23:49 +01:00 |
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cd68e60f09
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updated running_scripts with added rt and none and none_bts
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2022-07-28 15:22:44 +01:00 |
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d3d5698a3e
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added MultClfs_CVs.py and ml_iterator_CVs.py
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2022-07-28 15:19:58 +01:00 |
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b87f8d0295
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trying diff cv thresholds for single gene
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2022-07-28 15:19:13 +01:00 |
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8d8a61675f
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various edits
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2022-07-28 13:20:14 +01:00 |
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90b9477520
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ml_iterator tweaks
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2022-07-28 13:19:58 +01:00 |
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584b866f0b
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moved ../ml_functions/MultClfs_logo_skf.py to del
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2022-07-28 12:25:29 +01:00 |
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2c50124b1b
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moved logo_skf function to del as using the MultClfs for combined data
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2022-07-28 12:24:24 +01:00 |
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a6532ddfa3
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just running for pnca
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2022-07-27 17:11:30 +01:00 |
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744bc8f4a1
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added dummy classifier to models
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2022-07-27 17:10:04 +01:00 |
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c32005c99c
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adding other split types on ml_iterator
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2022-07-27 15:58:15 +01:00 |
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63c8876764
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checking the splitTTS script to make sure other splits have been factored in
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2022-07-27 15:52:20 +01:00 |
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f4cab1fdfb
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fixed masking condition for ML training data for genes and wrote revised mask files out
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2022-07-27 13:36:16 +01:00 |
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0adf69f75a
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added model names sklearn
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2022-07-16 15:35:42 +01:00 |
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39e72b2dfb
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added all_estimators
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2022-07-16 13:32:19 +01:00 |
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a590354f15
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saving work from panino
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2022-07-12 10:14:06 +01:00 |
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33e3b5a0a6
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various bugs
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2022-07-12 10:14:06 +01:00 |
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6950c4b057
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added reverse traininig as split type in SplitTTS.py
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2022-07-11 20:03:06 +01:00 |
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1965517681
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added other split_type options i.e none and none with bts
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2022-07-11 19:27:14 +01:00 |
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ce730fbe57
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uncommented
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2022-07-10 13:29:01 +01:00 |
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350be30f19
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minor changes to run combined_model
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2022-07-10 13:23:13 +01:00 |
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057c98c2f1
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updated rs
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2022-07-10 13:04:51 +01:00 |
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e37442efd2
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updated ml_iterator function args
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2022-07-10 13:03:14 +01:00 |
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9594d0a328
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uncommented models for logo
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2022-07-10 12:53:51 +01:00 |
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4d5b848471
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iterator
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2022-07-10 12:47:22 +01:00 |
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01ff9d5be6
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added instructions to run individual genes
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2022-07-10 12:45:45 +01:00 |
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3b4cfecc9f
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added target_count_numbers.py
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2022-07-10 12:43:00 +01:00 |
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de5c1270be
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added Mult_clfs_logo and Mult_clsf.py with consistency
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2022-07-10 12:32:52 +01:00 |
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