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e498d46f8b
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consurf plot: add debug option. logoP SNP: distance flame tiles
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2022-08-03 18:58:27 +01:00 |
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f2709f3992
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added replace b factor scripts for lig affinity and ppi2
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2022-08-02 20:30:43 +01:00 |
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87a3d7acf2
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generated simple affinity plots for embb
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2022-08-02 20:29:31 +01:00 |
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214e9232c6
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still trying affinity phew
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2022-08-02 16:55:31 +01:00 |
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d94aa10c9b
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saving work
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2022-08-01 21:44:11 +01:00 |
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66337c289c
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added scripts to generate mean stability for rpob
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2022-08-01 21:41:55 +01:00 |
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ccc877e811
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attempting affintiy stuff
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2022-08-01 21:41:02 +01:00 |
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0d8979dfcb
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separted cols
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2022-08-01 14:09:46 +01:00 |
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e750ee59aa
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saving
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2022-08-01 13:41:43 +01:00 |
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79c261963b
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sorting the ensemble and priority for ligand affinity
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2022-08-01 13:36:05 +01:00 |
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f3710bfaf5
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added mcsm_mean_affinity_ensemble.R and replaceBfactor_pdb_stability.R
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2022-07-31 19:25:28 +01:00 |
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1bf66b145c
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separating mcsm_mean_stability_ensemble from combined script
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2022-07-31 19:24:35 +01:00 |
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06e5363112
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added scriptaa mcsm_mean_stability_ensemble.R to get ensemble of averages across predictors for stability and affinity
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2022-07-31 16:29:47 +01:00 |
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4de1e800ec
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moved mut_landscape files to plotting
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2022-07-31 12:01:56 +01:00 |
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d6a63eed21
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added mut_landscape.R that outputs the mutational positions and annotations for generating the structural landscape of all gene-targets
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2022-07-31 12:01:56 +01:00 |
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26f284d76e
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added test_func_combined.py
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2022-07-29 00:14:39 +01:00 |
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9cd6613da6
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added cm_logo_skf_v2.py
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2022-07-29 00:13:54 +01:00 |
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e55906d2c7
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saving work
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2022-07-29 00:12:43 +01:00 |
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1695e90b42
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running none_complete with diff cv threhsolds
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2022-07-28 15:33:43 +01:00 |
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85f59155fa
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uncommented all models for a full run
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2022-07-28 15:28:31 +01:00 |
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37f5199c5c
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added the cm_ml_iterator_TODO.py for later
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2022-07-28 15:25:31 +01:00 |
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e32308d984
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moved old logs
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2022-07-28 15:24:49 +01:00 |
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fd0ccc9032
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added genes_ml_logs
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2022-07-28 15:23:49 +01:00 |
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cd68e60f09
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updated running_scripts with added rt and none and none_bts
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2022-07-28 15:22:44 +01:00 |
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d3d5698a3e
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added MultClfs_CVs.py and ml_iterator_CVs.py
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2022-07-28 15:19:58 +01:00 |
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b87f8d0295
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trying diff cv thresholds for single gene
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2022-07-28 15:19:13 +01:00 |
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8d8a61675f
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various edits
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2022-07-28 13:20:14 +01:00 |
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90b9477520
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ml_iterator tweaks
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2022-07-28 13:19:58 +01:00 |
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584b866f0b
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moved ../ml_functions/MultClfs_logo_skf.py to del
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2022-07-28 12:25:29 +01:00 |
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2c50124b1b
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moved logo_skf function to del as using the MultClfs for combined data
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2022-07-28 12:24:24 +01:00 |
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a6532ddfa3
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just running for pnca
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2022-07-27 17:11:30 +01:00 |
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744bc8f4a1
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added dummy classifier to models
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2022-07-27 17:10:04 +01:00 |
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c32005c99c
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adding other split types on ml_iterator
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2022-07-27 15:58:15 +01:00 |
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63c8876764
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checking the splitTTS script to make sure other splits have been factored in
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2022-07-27 15:52:20 +01:00 |
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f4cab1fdfb
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fixed masking condition for ML training data for genes and wrote revised mask files out
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2022-07-27 13:36:16 +01:00 |
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0adf69f75a
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added model names sklearn
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2022-07-16 15:35:42 +01:00 |
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39e72b2dfb
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added all_estimators
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2022-07-16 13:32:19 +01:00 |
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a590354f15
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saving work from panino
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2022-07-12 10:14:06 +01:00 |
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33e3b5a0a6
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various bugs
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2022-07-12 10:14:06 +01:00 |
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6950c4b057
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added reverse traininig as split type in SplitTTS.py
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2022-07-11 20:03:06 +01:00 |
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1965517681
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added other split_type options i.e none and none with bts
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2022-07-11 19:27:14 +01:00 |
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ce730fbe57
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uncommented
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2022-07-10 13:29:01 +01:00 |
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350be30f19
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minor changes to run combined_model
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2022-07-10 13:23:13 +01:00 |
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057c98c2f1
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updated rs
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2022-07-10 13:04:51 +01:00 |
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e37442efd2
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updated ml_iterator function args
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2022-07-10 13:03:14 +01:00 |
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9594d0a328
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uncommented models for logo
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2022-07-10 12:53:51 +01:00 |
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4d5b848471
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iterator
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2022-07-10 12:47:22 +01:00 |
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01ff9d5be6
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added instructions to run individual genes
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2022-07-10 12:45:45 +01:00 |
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3b4cfecc9f
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added target_count_numbers.py
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2022-07-10 12:43:00 +01:00 |
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de5c1270be
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added Mult_clfs_logo and Mult_clsf.py with consistency
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2022-07-10 12:32:52 +01:00 |
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