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3ddbee8c90
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finally moved foldx_outcome and deepddg_outcome calcs to combine_dfs.py in python script i.e cleaned source data
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2021-09-10 18:19:01 +01:00 |
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5c8a9e8f00
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sorted combining_dfs.py with all other data files and tidied up get_plotting_dfs.R
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2021-09-10 18:16:41 +01:00 |
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93038fa17c
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added lineage_dist.R nad renamed lineage_bp_data file to lineage_data
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2021-09-09 16:14:14 +01:00 |
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b7d50fbbcd
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added lineage_labels and mutation_info_labels to combinig_dfs_plotting
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2021-09-09 16:10:11 +01:00 |
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03031d2eb6
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moved all test scripts for functions to tests/
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2021-09-09 13:12:07 +01:00 |
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3cee341170
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replaced old lineage barplot with count and diversity combined plots sourced from function
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2021-09-07 09:27:47 +01:00 |
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50b89cdcd7
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one function with tuned params to generate count and diversity barplot
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2021-09-06 19:52:56 +01:00 |
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869fca7f94
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added function for generating lineage barplots and also test script along wiadding script for processing data and added it to get_plotting_dfs.R
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2021-09-06 19:50:50 +01:00 |
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605eb54526
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saving work for the day
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2021-09-02 17:40:24 +01:00 |
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fcb4b85747
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modified bp with option for adding stats and boxplplots. Moved old one to redundant
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2021-09-02 12:50:24 +01:00 |
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826d3c72b7
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added functions for bp with stat and tested them
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2021-08-27 14:05:00 +01:00 |
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edb409baef
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renamed dm_om barplot function scriptto lf_bp_stability.R
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2021-08-27 13:03:39 +01:00 |
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da9bb67706
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added function for stats from lf data
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2021-08-27 13:01:52 +01:00 |
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6e01ef22c0
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added stat_bp_stability.R which needs to be a function for generating stat plots
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2021-08-26 16:37:56 +01:00 |
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6d9412d232
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playing with dm_om (other)plots data and graph on gid branch
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2021-08-26 16:35:46 +01:00 |
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0e44958585
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added log10 OR and P values to myaf_or_calcs.R
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2021-08-23 20:01:01 +01:00 |
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182465d579
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added corr plots as function for interactive graphs on shiny
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2021-08-20 18:52:47 +01:00 |
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f7aac58081
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adde format_results_dynamut2.py and ran shiny scripts for barplots
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2021-08-19 16:25:38 +01:00 |
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55adc3fa60
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added leg_title size for bp function
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2021-07-07 13:11:13 +01:00 |
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374764b136
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renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
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2021-06-29 14:05:48 +01:00 |
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ac09cfc4e0
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moved barplot_colour_function.R to functions
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2021-06-29 13:58:22 +01:00 |
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c8be8407e8
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moved my_pairs_panel.R to functions/
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2021-06-24 12:13:15 +01:00 |
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ca2315523d
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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552c5e77aa
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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015e34894f
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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8277b489d6
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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5dec604742
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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2a8133898f
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added function and test for aa_prop_bp.R
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2021-06-14 09:22:05 +01:00 |
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6e8116bc16
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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5f82c8b393
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added script to test af_or_calcs
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2021-06-11 13:33:25 +01:00 |
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96af746726
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added mychisq_or.R and af_or_calcs.R
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2021-06-11 13:28:07 +01:00 |
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d9e00b9a42
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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29fa99b914
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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