|
|
ed739aeb71
|
sourcing plotting_data for subcols_axis_PS
|
2020-08-26 12:07:04 +01:00 |
|
|
|
b754f26f9b
|
added ligand df in plotting
|
2020-08-26 10:02:44 +01:00 |
|
|
|
73877942f4
|
added instructions on running plot scripts
|
2020-08-24 14:38:45 +01:00 |
|
|
|
75273cebbf
|
generated replaced Bfactor pdbs
|
2020-08-24 14:37:28 +01:00 |
|
|
|
54f9fd073b
|
rectified mcsm_mean_stability to avereage on raw values and then scale
|
2020-08-24 13:04:25 +01:00 |
|
|
|
d76345c3de
|
saving work to check merge conflicts resolved
|
2020-08-24 11:20:58 +01:00 |
|
|
|
f468554427
|
sourced plotting script in mean_stability calcs
|
2020-08-21 17:33:09 +01:00 |
|
|
|
a448d9276b
|
added plotting scripts from old run
|
2020-08-21 13:25:01 +01:00 |
|
|
|
d78626048c
|
script to format snp_info.txt
|
2020-08-21 13:23:29 +01:00 |
|
|
|
acd0b8355b
|
updated script to combine dfs
|
2020-08-21 13:22:28 +01:00 |
|
|
|
841d18d10b
|
sorted df by position for output in data_extraction
|
2020-08-14 17:57:12 +01:00 |
|
|
|
48773a19ef
|
tidy script for linking or_kinship with missense variant info
|
2020-08-14 16:41:11 +01:00 |
|
|
|
f8f33abad8
|
removed if clause for filenames
|
2020-08-13 18:39:16 +01:00 |
|
|
|
2d8cb01cb7
|
added output file for checking
|
2020-08-11 18:34:02 +01:00 |
|
|
|
dcd9a985ec
|
saving work, ready for more remote working
|
2020-08-07 13:35:02 +01:00 |
|
|
|
13203e6fe0
|
added data cjeckings script
|
2020-08-07 13:34:24 +01:00 |
|
|
|
61e41f1697
|
saving work
|
2020-08-07 13:33:44 +01:00 |
|
|
|
efe0178f4e
|
separting data processing from plotting, started with basic_barplots_PS script
|
2020-07-16 18:59:17 +01:00 |
|
|
|
7d1ecbb660
|
replaced single quotes with double in R scripts
|
2020-07-16 14:18:18 +01:00 |
|
|
|
5e1b39cea0
|
mean stability values calcs and replaceBfactor plots
|
2020-07-16 14:12:08 +01:00 |
|
|
|
1f44f8ec0a
|
calculating mean stabilty per position
please enter the commit message for your changes. Lines starting
|
2020-07-16 10:37:40 +01:00 |
|
|
|
1e785a08a1
|
scripts generating axis coloured subcols bp for PS
|
2020-07-15 16:31:10 +01:00 |
|
|
|
3cb33df009
|
made tweaks to output plot filenames
|
2020-07-15 16:29:36 +01:00 |
|
|
|
55f03bc343
|
adding plots as I tidy and generate
|
2020-07-15 13:50:07 +01:00 |
|
|
|
e41fb78e37
|
saved work before adding plots
|
2020-07-15 13:36:20 +01:00 |
|
|
|
e4270b67c8
|
saving work for today
|
2020-07-14 16:13:17 +01:00 |
|
|
|
2bc5be20b9
|
resolving merge conflicts dur to shoddy data
|
2020-07-14 14:09:42 +01:00 |
|
|
|
7d36e0e36b
|
fixed white space prob with mcsm input with merge
|
2020-07-14 14:07:23 +01:00 |
|
|
|
46b1505fdf
|
remove white space in colnames before mcsm format output
|
2020-07-14 12:59:40 +01:00 |
|
|
|
83383b4493
|
finding discrepancy in merging or dfs,grrrr
|
2020-07-13 18:31:29 +01:00 |
|
|
|
9e8469abe3
|
trying to resolve copy warning in code
|
2020-07-13 12:20:43 +01:00 |
|
|
|
57a966c7c4
|
added sanity checks for or_kinship calcs
|
2020-07-13 11:37:43 +01:00 |
|
|
|
f9500d5324
|
added sanity checks for or_kin
|
2020-07-10 15:24:57 +01:00 |
|
|
|
5677175423
|
refactoring or_kin script minor changes only
|
2020-07-10 12:38:42 +01:00 |
|
|
|
c80faef0bf
|
refactoring or_kin script minor changes only
|
2020-07-10 12:37:41 +01:00 |
|
|
|
aaf3f5e084
|
added cleaned up af_or_calcs.R
|
2020-07-09 15:55:16 +01:00 |
|
|
|
d3d82623d2
|
added consistent style scripts to format kd & rd values
|
2020-07-09 14:08:27 +01:00 |
|
|
|
e4a7deae7b
|
minor tidy up in foldx, mcsm and dssp scripts
|
2020-07-09 14:04:16 +01:00 |
|
|
|
0379d3e241
|
renamed mcsm_wrapper to run_mcsm
|
2020-07-09 13:33:56 +01:00 |
|
|
|
91348aaae2
|
added dssp.py with refactored argeparse
|
2020-07-09 12:58:55 +01:00 |
|
|
|
f8e345f5bc
|
adding default dirs and filenames to argparse in foldx and mcsm
|
2020-07-09 12:57:08 +01:00 |
|
|
|
6402990154
|
minor edits to format mcsm data like sorting df
|
2020-07-09 11:15:56 +01:00 |
|
|
|
01fbc2a87b
|
ran foldx and mcsm (get) for 33k dataset
|
2020-07-08 20:30:32 +01:00 |
|
|
|
0e71b23759
|
modified extraction to be explicit for extracting nsSNP for specified gene
|
2020-07-08 18:47:22 +01:00 |
|
|
|
1fa0dc6ad4
|
minor changes in data extraction
|
2020-07-08 16:01:54 +01:00 |
|
|
|
c958cc1081
|
data extraction tidy up
|
2020-07-08 13:26:33 +01:00 |
|
|
|
a4670b9944
|
saving work for the day
|
2020-07-07 18:31:14 +01:00 |
|
|
|
a7f21cfb14
|
adding clean files for rerrun 35k dataset
|
2020-07-07 18:28:55 +01:00 |
|
|
|
943513a338
|
added script to combine all files in one
|
2020-07-07 16:06:11 +01:00 |
|
|
|
5addb85851
|
renamed files that combine dfs
|
2020-07-07 15:46:13 +01:00 |
|
