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2993ab722a
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moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
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2021-06-24 17:45:40 +01:00 |
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8de2686401
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added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
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2021-06-24 17:34:53 +01:00 |
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0e15c05d8b
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checked logo_multiple_muts.R with the new sourcing script for data
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2021-06-24 16:43:23 +01:00 |
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6bbc3328b9
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added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
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2021-06-24 14:21:34 +01:00 |
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9668452e98
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made logo_plot.R source script that pull in all the data
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2021-06-24 14:19:46 +01:00 |
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c8be8407e8
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moved my_pairs_panel.R to functions/
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2021-06-24 12:13:15 +01:00 |
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ca2315523d
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fixed cmd running script problem for logo plots
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2021-06-24 12:12:36 +01:00 |
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552c5e77aa
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added first line to all func to run from
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2021-06-24 10:02:14 +01:00 |
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48a85ede0c
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saving work on logo plots before finishing
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2021-06-23 16:49:18 +01:00 |
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9d964e84b6
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generated logo_plot.R from cmd, checked
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2021-06-23 16:35:44 +01:00 |
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015e34894f
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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8277b489d6
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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4f4734f565
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updated logo_plot.R with functions
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2021-06-23 12:06:41 +01:00 |
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5dec604742
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moved combining_dfs_plotting.R to function and added test script for this as well
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2021-06-22 18:15:15 +01:00 |
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754cd70a6f
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added files that were moved to redundant
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2021-06-22 18:06:08 +01:00 |
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ea79f3b3c7
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turned combining_dfs_plotting.R to a function and moved old script to redundant
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2021-06-22 18:04:10 +01:00 |
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cd5cbce3a0
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updating script to sort out proper merging for plotting
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2021-06-22 14:46:03 +01:00 |
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7f2c1d7ed8
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took extra lines from data extraction
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2021-06-21 16:15:44 +01:00 |
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a3c10eb842
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added af_or to add to combining_dfs.py
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2021-06-21 14:53:04 +01:00 |
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1155959e67
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added deep ddg formatted data to combinig_dfs.py
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2021-06-21 12:56:06 +01:00 |
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3ff9604002
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added deepddg data to combining_df.py
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2021-06-21 11:53:56 +01:00 |
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25fcebe448
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added function to add aa code for mcsm and gwas style mutations to a given files
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2021-06-18 17:48:26 +01:00 |
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926d181120
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saving work before adding files
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2021-06-18 17:47:09 +01:00 |
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0e0f7c89df
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Merge branch 'gidb_dev'
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2021-06-14 13:27:00 +01:00 |
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0881181f4b
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added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv
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2021-06-14 13:24:00 +01:00 |
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58b5b63595
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changed aa_prop_water to 3 categ according to KD, updated ref dict
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2021-06-14 13:22:56 +01:00 |
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2a8133898f
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added function and test for aa_prop_bp.R
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2021-06-14 09:22:05 +01:00 |
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140bdc6d96
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added example for layout
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2021-06-14 09:06:30 +01:00 |
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851683811e
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weird pdbtools commit
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2021-06-11 21:45:18 +01:00 |
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6dd8cc6f44
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added another aa dict type to reference_dict.py and calculated electrostatisc changes for muts based on adding these properties to mcsm mut stule snps. This will allow the calculation on a given file type since the ref dict can now easily be adapted.
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2021-06-11 17:12:21 +01:00 |
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6e8116bc16
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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5f82c8b393
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added script to test af_or_calcs
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2021-06-11 13:33:25 +01:00 |
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96af746726
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added mychisq_or.R and af_or_calcs.R
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2021-06-11 13:28:07 +01:00 |
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ad0b814f9c
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moved old af_or_calcs.R to redundant
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2021-06-11 13:27:40 +01:00 |
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587be435e9
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saving the correct af or script
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2021-06-11 13:26:28 +01:00 |
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4e38e2a80e
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saving work before converting to a function
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2021-06-11 13:25:02 +01:00 |
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d9e00b9a42
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minor tweak to plotting_globals.R to make gene_match a global var
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2021-06-11 11:21:20 +01:00 |
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29fa99b914
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moved functions/ in the scripts dir
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2021-06-11 11:11:39 +01:00 |
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2dc81e72f4
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moved old bp scripts to redundant
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2021-06-10 16:18:08 +01:00 |
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ff7522eca2
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moved plotting_func to functions and replaced 3 basic_barplots scripts with 1
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2021-06-10 16:09:58 +01:00 |
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b9d176afa4
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added function for position_count_bp.R
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2021-06-10 14:46:11 +01:00 |
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cbb3749a21
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added functions dir for further tidying and tested this with ind scripts for stability
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2021-06-09 18:13:18 +01:00 |
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912a439589
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moved bp function script to function/
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2021-06-09 17:08:56 +01:00 |
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826b8aa9d0
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added shiny app and turned stability bp to function
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2021-06-09 17:05:02 +01:00 |
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f871dd39cd
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saving work
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2021-06-09 16:27:05 +01:00 |
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47a6ddbf72
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repuposed and ran basic_barplots for lig and foldx including filenames
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2021-06-09 11:33:08 +01:00 |
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27d79105ef
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repurposed basic_barplots_foldx.R
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2021-06-09 11:24:50 +01:00 |
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8f73c7b804
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uddated how to run plotting scripts. This is a cleaner version to keep up-to-date
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2021-06-08 16:53:07 +01:00 |
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3f691281bc
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wrapper script basic_barplots_PS.R now takes cmd and calls functions to generate plots.Tested and verfiied.
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2021-06-08 16:48:19 +01:00 |
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1505a3c707
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tidied plotting_data.R as a function returning a lits of dfs
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2021-06-08 16:00:28 +01:00 |
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