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moved plotting_func to functions and replaced 3 basic_barplots scripts with 1

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This commit is contained in:
Tanushree Tunstall 2021-06-10 16:09:58 +01:00
parent b9d176afa4
commit ff7522eca2
9 changed files with 287 additions and 237 deletions
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28
scripts/plotting/running_plotting_scripts.txt
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@ -1,12 +1,16 @@
#========
# basic_barplots_PS.R:
# basic_barplot.R:
#========
./basic_barplots_PS.R -d streptomycin -g gid -f /home/tanu/gid_test_file.csv
./basic_barplots.R -d streptomycin -g gid -f /home/tanu/gid_test_file.csv
sources:
## plotting_globals.R (previously dir.R)
## plotting_data.R
## position_count_bp.R
## stability_count_bp.R
outputs:
#5 svgs in the plotdir
# TODO
Delete: dirs.R
@ -17,23 +21,3 @@ resolving_ambiguous_muts.R:source("dirs.R")
#=======================================================================
#========
# basic_barplots_foldx.R:
#========
./basic_barplots_foldx.R -d streptomycin -g gid
# picks default file name, or you can specify by the -f flag
sources:
## plotting_globals.R (previously dir.R)
## plotting_data.R
#========
# basic_barplots_LIG.R:
#========
./basic_barplots_LIG.R -d streptomycin -g gid
# picks default file name, or you can specify by the -f flag
sources:
## plotting_globals.R (previously dir.R)
## plotting_data.R