From faf9ab9707bbef1712f556c3a2d60c7d7fafdf48 Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Tue, 9 Aug 2022 19:56:47 +0100 Subject: [PATCH] various --- .../plotting/plotting_thesis/dm_om_plots.R | 27 ++++++++++--------- 1 file changed, 14 insertions(+), 13 deletions(-) diff --git a/scripts/plotting/plotting_thesis/dm_om_plots.R b/scripts/plotting/plotting_thesis/dm_om_plots.R index c703157..6b18878 100644 --- a/scripts/plotting/plotting_thesis/dm_om_plots.R +++ b/scripts/plotting/plotting_thesis/dm_om_plots.R @@ -138,6 +138,19 @@ consurfP = lf_bp2(lf_consurfP #, p_title = "" , violin_quantiles = c(0.5), monochrome = F) +#============== +# Plot:PROVEAN +#============== +lf_proveanP = all_dm_om_df[['lf_provean']] +#lf_proveanP = lf_provean[!lf_provean$param_type%in%c(static_colsP),] +table(lf_proveanP$param_type) +lf_proveanP$param_type = factor(lf_proveanP$param_type) +table(lf_proveanP$param_type) + +proveanP = lf_bp2(lf_proveanP + #, p_title = "" + , violin_quantiles = c(0.5), monochrome = F) + #============== # Plot:SNAP2 #============== @@ -151,18 +164,6 @@ snap2P = lf_bp2(lf_snap2P #, p_title = "" , violin_quantiles = c(0.5), monochrome = F) -#============== -# Plot:PROVEAN -#============== -lf_proveanP = all_dm_om_df[['lf_provean']] -#lf_proveanP = lf_provean[!lf_provean$param_type%in%c(static_colsP),] -table(lf_proveanP$param_type) -lf_proveanP$param_type = factor(lf_proveanP$param_type) -table(lf_proveanP$param_type) - -proveanP = lf_bp2(lf_proveanP - #, p_title = "" - , violin_quantiles = c(0.5), monochrome = F) ############################################################################ #================ @@ -246,7 +247,7 @@ cowplot::plot_grid( , nrow=1 , rel_widths = c(1/7, 1/7,1/7,1/7, 1/7, 1.75/7)), #, rel_widths = c(1/8, 1/8,1/8,1/8, 1/8, 2.75/8)), # for 3 distances - cowplot::plot_grid(consurfP, snap2P, proveanP + cowplot::plot_grid(consurfP, proveanP, snap2P , mcsmligP , mcsmlig2P , mcsmppi2P