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calculating af_or using function and cmd options now

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This commit is contained in:
Tanushree Tunstall 2021-06-11 15:12:08 +01:00
parent 7686aa39b4
commit f88e2665e9
5 changed files with 156 additions and 11 deletions
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2
scripts/plotting/basic_barplots.R
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@ -69,7 +69,6 @@ import_dirs(drug, gene)
# dup_muts
#***********************************
#infile = "/home/tanu/git/Data/streptomycin/output/gid_comb_stab_struc_params.csv"
#infile = ""
#if (!exists("infile") && exists("gene")){
if (!is.character(infile) && exists("gene")){
@ -104,7 +103,6 @@ cat(paste0("\nVariables imported:"
cat("plots will output to:", plotdir)
#=======================================================================
# begin plots
# ------------------------------
# barplot for mscm stability
# ------------------------------