tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

script for saving pdb chains in single file

Browse source
This commit is contained in:
Tanushree Tunstall 2020-05-15 13:44:57 +01:00
parent 01a7cbf26e
commit f7e371a585
4 changed files with 103 additions and 17 deletions
Download patch file Download diff file Expand all files Collapse all files

18
scripts/pdbtools_commands
View file

@ -23,3 +23,21 @@ home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_residue_renumber /home
/home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_ligand /home/tanu/git/Data/ethambutol/input/3byw.pdb
/home/tanu/git/LSHTM_analysis/scripts/pdbtools/scripts/pdb_ligand /home/tanu/git/Data/cycloserine/input/alr_complex_model.pdb
#^^^^^^^^^^^^^^^^^^^^^^^^^^^^
# my pdb tools
#======================================================
# save specifed chains as individual pdbs
#======================================================
./pdb_chain_splitter.py -i /home/tanu/git/Data/ethambutol/input/3byw.pdb -c DF -p /home/tanu/git/Data/ethambutol/input -o 3byw
#======================================================
# save specifed chains as one pdb
#======================================================
./pdb_chain_extract.py -i /home/tanu/git/Data/ethambutol/input/3byw.pdb -c DF -p /home/tanu/git/Data/ethambutol/input -o 3byw^C