tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

saving work for today

Browse source
This commit is contained in:
Tanushree Tunstall 2020-04-09 16:40:45 +01:00
parent 0550cfe0e2
commit f5241048b4
2 changed files with 7 additions and 8 deletions
Download patch file Download diff file Expand all files Collapse all files

6
scripts/data_extraction.py
View file

@ -745,9 +745,9 @@ del(c1, c2, col_to_split1, col_to_split2, comp_gene_samples, dr_WF0, dr_df, dr_m
out_filename1 = gene.lower() + '_ambiguous_muts.csv'
outfile1 = outdir + '/' + out_filename1
print('Writing file: ambiguous muts',
'\nFilename:', out_filename1,
'\nPath:', outdir)
print('Writing file: ambiguous muts'
, '\nFilename:', out_filename1
, '\nPath:', outdir)
#common_muts = ['gene_matchVal180Phe','gene_matchGln10Pro'] # test
inspect = gene_LF1[gene_LF1['mutation'].isin(common_muts)]