diff --git a/scripts/plotting/barplots_subcolours_aa_PS.R b/scripts/plotting/barplots_subcolours_aa_PS.R index 5850abf..95a94a9 100755 --- a/scripts/plotting/barplots_subcolours_aa_PS.R +++ b/scripts/plotting/barplots_subcolours_aa_PS.R @@ -20,7 +20,7 @@ library(ggplot2) library(data.table) source("barplot_colour_function.R") #source("subcols_axis.R") -source("subcols_axis_PS.R") +source("subcols_axis.R") # should return the following dfs, directories and variables # mut_pos_cols diff --git a/scripts/plotting/columns_all_params.csv b/scripts/plotting/columns_all_params.csv deleted file mode 100644 index fb8adc3..0000000 --- a/scripts/plotting/columns_all_params.csv +++ /dev/null @@ -1,87 +0,0 @@ -,x,,changes, -1,mutationinformation,,Mutationinformation, -2,wild_type,,,consider...wild_aa -3,position,,Position, -4,mutant_type,,,consider...mutant_aa -5,chain,,, -6,ligand_id,,, -7,ligand_distance,,, -8,duet_stability_change,,, -9,duet_outcome,,DUET_outcome, -10,ligand_affinity_change,,, -11,ligand_outcome,,Lig_outcome, -12,duet_scaled,,ratioDUET, -13,affinity_scaled,,ratioPredAff, -14,wild_pos,,WildPos, -15,wild_chain_pos,,, -16,ddg,,, -17,contacts,,, -18,electro_rr,,, -19,electro_mm,,, -20,electro_sm,,, -21,electro_ss,,, -22,disulfide_rr,,, -23,disulfide_mm,,, -24,disulfide_sm,,, -25,disulfide_ss,,, -26,hbonds_rr,,, -27,hbonds_mm,,, -28,hbonds_sm,,, -29,hbonds_ss,,, -30,partcov_rr,,, -31,partcov_mm,,, -32,partcov_sm,,, -33,partcov_ss,,, -34,vdwclashes_rr,,, -35,vdwclashes_mm,,, -36,vdwclashes_sm,,, -37,vdwclashes_ss,,, -38,volumetric_rr,,, -39,volumetric_mm,,, -40,volumetric_sm,,, -41,volumetric_ss,,, -42,wild_type_dssp,,, -43,asa,,, -44,rsa,,, -45,ss,,, -46,ss_class,,, -47,chain_id,,, -48,wild_type_kd,,, -49,kd_values,,, -50,rd_values,,, -51,wt_3letter_caps,,, -52,mutation,,, -53,af,,, -54,beta_logistic,,, -55,or_logistic,,, -56,pval_logistic,,, -57,se_logistic,,, -58,zval_logistic,,, -59,ci_low_logistic,,, -60,ci_hi_logistic,,, -61,or_mychisq,,, -62,or_fisher,,, -63,pval_fisher,,, -64,ci_low_fisher,,, -65,ci_hi_fisher,,, -66,est_chisq,,, -67,pval_chisq,,, -68,chromosome_number,,, -69,ref_allele,,, -70,alt_allele,,, -71,mut_type,,, -72,gene_id,,, -73,gene_number,,, -74,mut_region,,, -75,mut_info,,, -76,chr_num_allele,,, -77,wt_3let,,, -78,mt_3let,,, -79,af_kin,,, -80,or_kin,,, -81,pwald_kin,,, -82,beta_kin,,, -83,se_kin,,, -84,logl_h1_kin,,, -85,l_remle_kin,,, -86,n_miss,,,