diff --git a/config/alr.R b/config/alr.R index c38bbc5..544bcfb 100644 --- a/config/alr.R +++ b/config/alr.R @@ -142,13 +142,13 @@ if ( all(c1, c2, c3) ) { #K42: K66, Y271:Y295, M319:M343, W89: W113, W203: W227, H209:H233, Q321:Q345 aa_pos_paper = sort(unique(c(66,70,112,113,164,196,227,233,237,252,254,255,295,342,343,344,345,388))) plp_pos_paper = sort(unique(c(66, 70, 112, 196, 227, 237, 252, 254, 255, 388))) -add_to_dcs = c(113, 227, 233, 345) -add_to_plp = c(113, 227, 233, 345) # 227 not in plp and 227, 233 and 345 not with snp +#add_to_dcs = c(113, 227, 233, 345) +#add_to_plp = c(113, 227, 233, 345) # 227 not in plp and 227, 233 and 345 not with snp -active_aa_pos = sort(unique(c(aa_pos_paper, active_aa_pos))) +#active_aa_pos = sort(unique(c(aa_pos_paper, active_aa_pos))) aa_pos_plp = sort(unique(c(plp_pos_paper, 66, 70, 112, 237, 252, 254, 255, 196, add_to_plp))) -aa_pos_dcs = sort(unique(c(aa_pos_dcs, add_to_dcs))) -aa_pos_drug = aa_pos_dcs +#aa_pos_dcs = sort(unique(c(aa_pos_dcs, add_to_dcs))) +#aa_pos_drug = aa_pos_dcs # add two key residues #aa_pos_drug = sort(unique(c(319, 364, aa_pos_drug)))