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changing category of ambiguous muts

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This commit is contained in:
Tanushree Tunstall 2020-09-08 18:51:03 +01:00
parent e980085294
commit f10f8f6d2a
3 changed files with 55 additions and 4 deletions
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8
scripts/combining_dfs.py
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@ -552,6 +552,14 @@ else:
output_cols = combined_df_all.columns
#%% IMPORTANT result info
if combined_df_all['or_mychisq'].isna().sum() == len(combined_df) - len(afor_df):
print('PASS: No. of NA in or_mychisq matches expected length'
, '\nNo. of with NA in or_mychisq:', combined_df_all['or_mychisq'].isna().sum()
, '\nNo. of NA in or_kin:', combined_df_all['or_kin'].isna().sum())
else:
print('FAIL: No. of NA in or_mychisq does not match expected length')
if combined_df_all.shape[0] == outdf_expected_rows:
print('\nINFORMARIONAL ONLY: combined_df_all has duplicate muts present but with unique ref and alt allele'
, '\n=============================================================')