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attempted omitting snp from logo plot for OR

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This commit is contained in:
Tanushree Tunstall 2022-01-16 14:45:39 +00:00
parent 1244581cdd
commit efe6703673
3 changed files with 12 additions and 23 deletions
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7
scripts/functions/tests/test_logoP.R
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@ -1,17 +1,14 @@
#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
LogoPlotCustomH (plot_df = merged_df3
, x_axis_colname = "position"
, y_axis_colname = "or_mychisq"
, symbol_colname = "mutant_type"
, y_axis_log = F
, log_value = log10
, y_scale_increment = 5
, rm_empty_pos = F
, y_axis_increment = 5
, rm_empty_y = T
, my_logo_col = 'chemistry'
, x_lab = "Position"
, y_lab = "Odds Ratio"