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turned combining_dfs_plotting.R to a function and moved old script to redundant

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This commit is contained in:
Tanushree Tunstall 2021-06-22 18:04:10 +01:00
parent cd5cbce3a0
commit ea79f3b3c7
3 changed files with 327 additions and 883 deletions
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12
scripts/plotting/basic_barplots.R
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@ -68,18 +68,18 @@ import_dirs(drug, gene)
# my_df_u_lig
# dup_muts
#***********************************
#infile = "/home/tanu/git/Data/streptomycin/output/gid_comb_stab_struc_params.csv"
#infile_params = "/home/tanu/git/Data/streptomycin/output/gid_comb_stab_struc_params.csv"
#if (!exists("infile") && exists("gene")){
if (!is.character(infile) && exists("gene")){
if (!exists("infile_params") && exists("gene")){
#if (!is.character(infile_params) && exists("gene")){
#in_filename_params = paste0(tolower(gene), "_all_params.csv")
in_filename_params = paste0(tolower(gene), "_comb_stab_struc_params.csv") # part combined for gid
infile = paste0(outdir, "/", in_filename_params)
cat("\nInput file not specified, assuming filename: ", infile, "\n")
infile_params = paste0(outdir, "/", in_filename_params)
cat("\nInput file not specified, assuming filename: ", infile_params, "\n")
}
# Get the DFs out of plotting_data()
pd_df = plotting_data(infile)
pd_df = plotting_data(infile_params)
my_df = pd_df[[1]]
my_df_u = pd_df[[2]]
my_df_u_lig = pd_df[[3]]