From e980085294e083c9bcbdcc70eaabf50531617f0a Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Tue, 8 Sep 2020 17:52:45 +0100 Subject: [PATCH] outputting revised all params file --- scripts/combining_dfs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/combining_dfs.py b/scripts/combining_dfs.py index eab2808..af8be26 100755 --- a/scripts/combining_dfs.py +++ b/scripts/combining_dfs.py @@ -487,7 +487,7 @@ all_cols = combined_df_all.columns first_cols = ['mutationinformation','mutation', 'wild_type', 'position', 'mutant_type'] last_cols = [col for col in combined_df_all.columns if col not in first_cols] -df = combined_df_all[first_cols+last_cols] +combined_df_all = combined_df_all[first_cols+last_cols] #%% IMPORTANT: check if mutation related info is all populated after this merge # select string colnames to ensure no NA exist there