diff --git a/scripts/combining_dfs.py b/scripts/combining_dfs.py index eab2808..af8be26 100755 --- a/scripts/combining_dfs.py +++ b/scripts/combining_dfs.py @@ -487,7 +487,7 @@ all_cols = combined_df_all.columns first_cols = ['mutationinformation','mutation', 'wild_type', 'position', 'mutant_type'] last_cols = [col for col in combined_df_all.columns if col not in first_cols] -df = combined_df_all[first_cols+last_cols] +combined_df_all = combined_df_all[first_cols+last_cols] #%% IMPORTANT: check if mutation related info is all populated after this merge # select string colnames to ensure no NA exist there