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sorted merged_df2 and consequently others by position in combining_dfs_plotting.R

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Tanushree Tunstall 2021-09-16 12:43:36 +01:00
parent cb5d7aa5ab
commit e8734b1c4b
2 changed files with 71 additions and 7 deletions
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70
scripts/functions/tests/test_bp_subcolours.R
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@ -1,20 +1,78 @@
#!/usr/bin/env Rscript
source("~/git/Misc/shiny/myshiny/gid_data.R")
setwd("~/git/LSHTM_analysis/scripts/functions/")
source("bp_subcolours.R")
#source("~/git/Misc/shiny/myshiny/gid_data.R")
source("~/git/LSHTM_analysis/config/gid.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
source("~/git/LSHTM_analysis/scripts/functions/bp_subcolours.R")
# p1
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "duet_scaled"
, stability_outcome_colname = "duet_outcome"
, p_title = "DUET" )
# p2
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "foldx_scaled"
, stability_outcome_colname = "foldx_outcome"
, p_title = "FoldX" )
# p3
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "deepddg_scaled"
, stability_outcome_colname = "deepddg_outcome"
, p_title = "DeepDDG" )
# p4
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_dynamut2_scaled"
, stability_outcome_colname = "ddg_dynamut2_outcome"
, p_title = "Dynamut2" )
# p5
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "foldx_scaled"
, stability_outcome_colname = "foldx_outcome"
, p_title = "FoldX" )
, stability_colname = "mcsm_na_scaled"
, stability_outcome_colname = "mcsm_na_outcome"
, p_title = "mCSM-NA" )
# p6
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_dynamut_scaled"
, stability_outcome_colname = "ddg_dynamut_outcome"
, p_title = "Dynamut" )
# p7
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_mcsm_scaled"
, stability_outcome_colname = "ddg_mcsm_outcome"
, p_title = "mCSM" )
# p8
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_duet_scaled"
, stability_outcome_colname = "ddg_duet_outcome"
, p_title = "DUET-d" )
# p9
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_sdm_scaled"
, stability_outcome_colname = "ddg_sdm_outcome"
, p_title = "SDM" )
# p10
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "ddg_encom_scaled"
, stability_outcome_colname = "ddg_encom_outcome"
, p_title = "ENCoM-Stability" )
# p11
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "dds_encom_scaled"
, stability_outcome_colname = "dds_encom_outcome"
, p_title = "ENCoM-Flexibility" )
# p12
bp_stability_hmap(plotdf = merged_df3
, stability_colname = "affinity_scaled"
, stability_outcome_colname = "ligand_outcome"
, p_title = "mCSM-lig" )