diff --git a/dynamut/run_get_results_dynamut.py b/dynamut/run_get_results_dynamut.py index b017a52..770e367 100644 --- a/dynamut/run_get_results_dynamut.py +++ b/dynamut/run_get_results_dynamut.py @@ -24,13 +24,14 @@ indir = datadir + '/' + drug + '/input' outdir = datadir + '/' + drug + '/output' #============================================================================== -# batch 4: 03.txt, # RETRIEVED -my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b4.txt' -my_suffix = 'gid_b4' +# batch 6: 05.txt, # RETRIEVED +#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt' +#my_suffix = 'gid_b6' + +# batch 7: 06.txt, # RETRIEVED +#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt' +#my_suffix = 'gid_b7' -# batch 5: 04.txt, # RETRIEVED -#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b5.txt' -#my_suffix = 'gid_b5' #============================================================================== #========================== diff --git a/dynamut/run_submit_dynamut.py b/dynamut/run_submit_dynamut.py index a1778ec..0d6dfa9 100644 --- a/dynamut/run_submit_dynamut.py +++ b/dynamut/run_submit_dynamut.py @@ -29,13 +29,13 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk' my_pdb_file = indir + '/gid_complex.pdb' #============================================================================== -# batch 4: 03.txt, # RAN: 18 Feb, ~11:19 -#my_mutation_list = outdir + '/snp_batches/50/snp_batch_03.txt' -#my_suffix = 'gid_b4' +# batch 6: 05.txt, # RAN: +#my_mutation_list = outdir + '/snp_batches/50/snp_batch_05.txt' +#my_suffix = 'gid_b6' -# batch 5: 04.txt, # RAN: 18 Feb, ~11:21 -#my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt' -#my_suffix = 'gid_b5' +# batch 7: 06.txt, # RAN: +my_mutation_list = outdir + '/snp_batches/50/snp_batch_06.txt' +my_suffix = 'gid_b7' #============================================================================== #==========================