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added first line to all func to run from

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This commit is contained in:
Tanushree Tunstall 2021-06-24 10:02:14 +01:00
parent 1c27bbff11
commit e822f9f690
8 changed files with 13 additions and 8 deletions
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5
scripts/plotting/logo_multiple_muts.R
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@ -102,8 +102,9 @@ plot_logo_multiple_muts = paste0(plotdir,"/", logo_multiple_muts)
#%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# REASSIGNMENT
my_df = merged_df3
my_df = merged_df3
#%%%%%%%%%%%%%%%%%%%%%%%%%%%%
colnames(my_df)
str(my_df)
@ -113,7 +114,7 @@ c1 = unique(my_df$position)
nrow(my_df)
# get freq count of positions so you can subset freq<1
require(data.table)
#require(data.table)
setDT(my_df)[, mut_pos_occurrence := .N, by = .(position)] #189, 36
table(my_df$position)