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added Mult_clfs_logo and Mult_clsf.py with consistency

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This commit is contained in:
Tanushree Tunstall 2022-07-10 12:32:52 +01:00
parent 06f2ce97b6
commit de5c1270be
5 changed files with 201 additions and 115 deletions
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7
scripts/ml/combined_model/cm_logo_skf.py
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@ -105,6 +105,7 @@ def CMLogoSkf(cm_input_df
, target_var = 'dst_mode'
, gene_group = 'gene_name'
, std_gene_omit = []
, output_dir = outdir
, file_suffix = ""
):
@ -138,7 +139,7 @@ def CMLogoSkf(cm_input_df
# else:
# file_suffix = file_suffix
outFile = outdir + str(n_tr_genes+1) + "genes_" + tts_split_type + '_' + file_suffix + ".csv"
outFile = output_dir + str(n_tr_genes+1) + "genes_" + tts_split_type + '_' + file_suffix + ".csv"
print(outFile)
@ -170,7 +171,7 @@ def CMLogoSkf(cm_input_df
#cm_bts_y = cm_test_df.loc[:, 'dst_mode']
cm_bts_y = cm_test_df.loc[:, target_var]
print('\nTEST data dim:', cm_bts_X.shape
print('\nTEST data dim:' , cm_bts_X.shape
, '\nTEST Target dim:', cm_bts_y.shape)
print("Running Multiple models on LOGO with SKF")
@ -209,4 +210,4 @@ def CMLogoSkf(cm_input_df
# Actual Data
#===============
CMLogoSkf(cm_input_df = combined_df_actual, file_suffix = "actual")
CMLogoSkf(cm_input_df = combined_df_actual, std_gene_omit=['alr'], file_suffix = "actual")
# CMLogoSkf(cm_input_df = combined_df_actual, std_gene_omit=['alr'], file_suffix = "actual")