tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

SNP -> SAV for thesis plots

Browse source
This commit is contained in:
Tanushree Tunstall 2023-02-19 17:43:22 +00:00
parent 777d3765cf
commit db7e2912e1
31 changed files with 145 additions and 145 deletions
Download patch file Download diff file Expand all files Collapse all files

6
scripts/functions/tests/test_logo_plots.R
View file

@ -37,7 +37,7 @@ LP1<- LogoPlotCustomH (plot_df = merged_df3
)
########################################
# Logo plot showing nsSNPs by positions
# Logo plot showing SAVs by positions
# wild-type and mutant aa
# script: logoP_snp.R
########################################
@ -48,7 +48,7 @@ LP2<- LogoPlotSnps(plot_df = merged_df3
, omit_snp_count = c(0)# can be 0,1, 2, etc.# DD
, my_logo_col = "chemistry" #DD
, x_lab = "Wild-type position"
, y_lab = "nsSNP count"
, y_lab = "SAV count"
, x_ats = 10
, x_tangle = 90
, y_ats = 15
@ -87,7 +87,7 @@ LP3<- LogoPlotMSA(unified_msa
, x_axis_offset_filtered = 0.05
, y_axis_offset = 0.05
#, y_breaks = c(0, 2, 4, 6, 8, 10, 12)
, x_lab_mut = "nsSNP-position"
, x_lab_mut = "SAV-position"
#, y_lab_mut
, x_ats = 10
, x_tangle = 90