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added cm_logo_skf.py and placeholder for splits

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Tanushree Tunstall 2022-07-01 13:55:12 +01:00
parent 952cfeb4c0
commit d812835713
4 changed files with 254 additions and 49 deletions
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40
scripts/ml/ml_functions/ml_data_combined.py
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@ -63,40 +63,8 @@ else:
, '\nGot:', len(common_cols))
colnames_combined_df = combined_df.columns
if 'gene_name' in colnames_combined_df:
print("\nGene name included")
else:
('\nGene name NOT included')
##############################################################################
#%% split_tts(): func params
# (ml_input_data
# , data_type = ['actual', 'complete']
# , split_type = ['70_30', '80_20', 'sl']
# , oversampling = True
# , dst_colname = 'dst'# determine how to subset the actual vs reverse data
# , target_colname = 'dst_mode'
# , include_gene_name = True
# , k_smote = 5)
#%% split data into different data types
# #===================
# # 70/30
# #===================
# # actual
# tts_7030_paramD = {'data_type' : 'actual'
# , 'split_type' : '70_30'}
# # complete
# tts_cd_7030_paramD = {'data_type' : 'complete'
# , 'split_type' : '70_30'}
# # call split_tts()
# data_CM_7030D = split_tts(ml_input_data = combined_df
# , **tts_7030_paramD
# , oversampling = True
# , dst_colname = 'dst'
# , target_colname = 'dst_mode'
# , include_gene_name = False) # when not doing leave one group out
# data_cd_CM_7030D = split_tts(ml_input_data = combined_df
# , **tts_cd_7030_paramD
# , oversampling = True
# , dst_colname = 'dst'
# , target_colname = 'dst_mode'
# , include_gene_name = False)