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added mut_landscape.R that outputs the mutational positions and annotations for generating the structural landscape of all gene-targets

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Tanushree Tunstall 2022-07-30 19:22:07 +01:00
parent 26f284d76e
commit d6a63eed21
2 changed files with 157 additions and 1 deletions
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3
scripts/count_vars_ML.R
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@ -212,7 +212,7 @@ str(a)
###################################################
###################################################
###################################################
#
source("~/git/LSHTM_analysis/config/alr.R")
source("~/git/LSHTM_analysis/config/embb.R")
source("~/git/LSHTM_analysis/config/gid.R")
@ -231,6 +231,7 @@ table(df3$mutation_info)
table(df3$mutation_info_orig)
table(df3$mutation_info_labels_orig)
# used in plots and analyses
table(df3$mutation_info_labels) # different, and matches dst_mode
table(df3$dst_mode)