tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

added placeholder defaults for functions in R to make sure that R shiny layput works with a data set for meeting tomorrow

Browse source
This commit is contained in:
Tanushree Tunstall 2022-02-14 19:33:00 +00:00
parent 0460ca1708
commit d38521e03a
11 changed files with 120 additions and 83 deletions
Download patch file Download diff file Expand all files Collapse all files

8
scripts/functions/tests/test_bp_lineage.R
View file

@ -20,8 +20,8 @@ levels(lin_lf_plot$sel_lineages_f)
#=========================
# Lineage count plot
#=========================
lin_count_bp(lin_lf_plot
, x_categ = "sel_lineages_f"
lin_count_bp(lin_lf_plot = lin_lf
, x_categ = "sel_lineages"
, y_count = "p_count"
, bar_fill_categ = "count_categ"
, display_label_col = "p_count"
@ -51,8 +51,8 @@ levels(lin_wf_plot$sel_lineages_f)
#=========================
# Lineage Diversity plot
#=========================
lin_count_bp(lin_wf_plot
, x_categ = "sel_lineages_f"
lin_count_bp(lin_wf_plot = lin_wf
, x_categ = "sel_lineages"
, y_count = "snp_diversity"
, display_label_col = "snp_diversity_f"
, bar_stat_stype = "identity"