From d27b5898f7e002cc94d6df839250a4f5fc5cf8eb Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Fri, 19 Feb 2021 12:09:26 +0000 Subject: [PATCH] code to retrieve results from batch 4 and 5 once ready --- dynamut/run_get_results_dynamut.py | 9 ++++++--- dynamut/run_submit_dynamut.py | 8 ++++++-- 2 files changed, 12 insertions(+), 5 deletions(-) diff --git a/dynamut/run_get_results_dynamut.py b/dynamut/run_get_results_dynamut.py index 4c3949b..b017a52 100644 --- a/dynamut/run_get_results_dynamut.py +++ b/dynamut/run_get_results_dynamut.py @@ -24,10 +24,13 @@ indir = datadir + '/' + drug + '/input' outdir = datadir + '/' + drug + '/output' #============================================================================== -# batch 3: 02.txt, # RETRIEVED 18 Feb -my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b3.txt' -my_suffix = 'gid_b3' +# batch 4: 03.txt, # RETRIEVED +my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b4.txt' +my_suffix = 'gid_b4' +# batch 5: 04.txt, # RETRIEVED +#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b5.txt' +#my_suffix = 'gid_b5' #============================================================================== #========================== diff --git a/dynamut/run_submit_dynamut.py b/dynamut/run_submit_dynamut.py index edf56ca..a1778ec 100644 --- a/dynamut/run_submit_dynamut.py +++ b/dynamut/run_submit_dynamut.py @@ -29,9 +29,13 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk' my_pdb_file = indir + '/gid_complex.pdb' #============================================================================== +# batch 4: 03.txt, # RAN: 18 Feb, ~11:19 +#my_mutation_list = outdir + '/snp_batches/50/snp_batch_03.txt' +#my_suffix = 'gid_b4' + # batch 5: 04.txt, # RAN: 18 Feb, ~11:21 -my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt' -my_suffix = 'gid_b5' +#my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt' +#my_suffix = 'gid_b5' #============================================================================== #==========================