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added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script

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Tanushree Tunstall 2022-02-01 16:25:58 +00:00
parent 3d45780c1a
commit d13484e8f5
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scripts/functions/tests/test_lineage_plot_data.R Normal file
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#!/usr/bin/env Rscript
#source("~/git/LSHTM_analysis/config/alr.R")
#source("~/git/LSHTM_analysis/config/embb.R")
source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/katg.R")
#source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#####################################################################
lineage_dfL = lineage_plot_data(df = merged_df2
, lineage_column_name = "lineage"
, remove_empty_lineage = F
, lineage_label_col_name = "lineage_labels"
, id_colname = "id"
, snp_colname = "mutationinformation"
)
lin_wf = lineage_dfL[['lin_wf']]
lin_lf = lineage_dfL[['lin_lf']]