renamed files in dynamut for consistency

dynamut/run_get_results_dynamut.py

@@ -0,0 +1,41 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Wed Aug 19 14:33:51 2020
+
+@author: tanu
+"""
+#%% load packages
+import os
+homedir = os.path.expanduser('~')
+os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
+from get_results import *
+########################################################################
+# variables
+my_host = 'http://biosig.unimelb.edu.au'
+# Needed if things try to block the 'requests' user agent
+#headers = {"User-Agent":"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/83.0.4103.97 Safari/537.36"}
+
+# TODO: add cmd line args
+#gene = 'gid'
+drug = 'streptomycin'
+datadir = homedir + '/git/Data'
+indir = datadir + '/' + drug + '/input'
+outdir = datadir + '/' + drug + '/output'
+
+# batch 1: 00.txt
+my_url_file =  outdir + '/dynamut_temp/dynamut_result_url_gid_b1.txt'
+my_suffix = 'gid_b1'
+
+#==========================
+# CALL: get_results() 
+# Data: gid+streptomycin
+#==========================
+print(my_url_file, 'suffix:', my_suffix)
+
+get_results(url_file  = my_url_file
+           , host_url = my_host
+           , output_dir = outdir
+           , outfile_suffix = my_suffix)
+           
+########################################################################