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ran mcsm format for embb

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Tanushree Tunstall 2021-11-13 09:43:56 +00:00
parent 4eaa0b5d2b
commit cee10cc540
3 changed files with 12 additions and 10 deletions
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4
scripts/combining_dfs.py
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@ -122,7 +122,9 @@ if gene.lower() == "gid":
in_filename_mcsm = gene.lower() + '_complex_mcsm_norm_SRY.csv' # was incorrectly SAM previously
if gene.lower() == "embb":
print("\nReading mCSM file for gene:", gene)
in_filename_mcsm = gene.lower() + '_complex_mcsm_norm1.csv'
#in_filename_mcsm = gene.lower() + '_complex_mcsm_norm1.csv'
in_filename_mcsm = gene.lower() + '_complex_mcsm_norm2.csv'
if gene.lower() in gene_list_normal:
print("\nReading mCSM file for gene:", gene)
in_filename_mcsm = gene.lower() + '_complex_mcsm_norm.csv'