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running dynamut in batches

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Tanushree Tunstall 2021-02-18 11:27:20 +00:00
parent ff2bc78645
commit ce5b545703
2 changed files with 13 additions and 19 deletions
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21
dynamut/run_submit_dynamut.py
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@ -9,7 +9,7 @@ Created on Wed Aug 19 14:33:51 2020
import os
homedir = os.path.expanduser('~')
os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
from submit import *
from submit_dynamut import *
########################################################################
# variables
my_host = 'http://biosig.unimelb.edu.au'
@ -28,20 +28,11 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk'
my_pdb_file = indir + '/gid_complex.pdb'
# batch 1: 00.txt
#my_mutation_list =outdir + '/snp_batches/50/snp_batch_00.txt'
#my_suffix = 'gid_b1'
#RAN: 11 Feb, ~14:00 pm * RETRIEVED
# batch 2: 01.txt
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_01.txt'
#my_suffix = 'gid_b2'
#RAN: 12 Feb, ~10:00 am, AWAITING
# batch 3: 02.txt
my_mutation_list = outdir + '/snp_batches/50/snp_batch_02.txt'
my_suffix = 'gid_b3'
#RAN: 12 Feb, ~12:40 pm, AWAITING
#==============================================================================
# batch 5: 04.txt, # RAN: 18 Feb, ~11:21
my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt'
my_suffix = 'gid_b5'
#==============================================================================
#==========================
# CALL: submit_dynamut()