tanu/LSHTM_analysis
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running dynamut in batches

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Tanushree Tunstall 2021-02-18 11:27:20 +00:00
parent ff2bc78645
commit ce5b545703
2 changed files with 13 additions and 19 deletions
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11
dynamut/run_get_results_dynamut.py
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@ -9,7 +9,7 @@ Created on Wed Aug 19 14:33:51 2020
import os
homedir = os.path.expanduser('~')
os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
from get_results import *
from get_results_dynamut import *
########################################################################
# variables
my_host = 'http://biosig.unimelb.edu.au'
@ -23,9 +23,12 @@ datadir = homedir + '/git/Data'
indir = datadir + '/' + drug + '/input'
outdir = datadir + '/' + drug + '/output'
# batch 1: 00.txt
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b1.txt'
my_suffix = 'gid_b1'
#==============================================================================
# batch 3: 02.txt, # RETRIEVED 18 Feb
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b3.txt'
my_suffix = 'gid_b3'
#==============================================================================
#==========================
# CALL: get_results()