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added lineage_labels and mutation_info_labels to combinig_dfs_plotting

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This commit is contained in:
Tanushree Tunstall 2021-09-09 16:10:11 +01:00
parent 9bb3ac2a01
commit cdab8f0414
4 changed files with 38 additions and 187 deletions
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8
scripts/plotting/lineage_basic_barplots_combined.R
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@ -55,9 +55,7 @@ plot_basic_bp_lineage_cl
# Data: All lineages or
# selected few
#------------------------
sel_lineages = levels(lin_lf$sel_lineages)[1:4]
sel_lineages
lin_lf_plot = lin_lf[lin_lf$sel_lineages%in%sel_lineages,]
lin_lf_plot = lin_lf[lin_lf$sel_lineages%in%c("L1", "L2", "L3", "L4"),]
str(lin_lf_plot)
# drop unused factor levels
@ -90,9 +88,7 @@ lin_countP
# Data: All lineages or
# selected few
#------------------------
sel_lineages = levels(lin_wf$sel_lineages)[1:4]
sel_lineages
lin_wf_plot = lin_wf[lin_wf$sel_lineages%in%sel_lineages,]
lin_wf_plot = lin_wf[lin_wf$sel_lineages%in%c("L1", "L2", "L3", "L4"),]
str(lin_wf_plot)
# drop unused factor levels