diff --git a/mcsm_na/run_get_results.py b/mcsm_na/run_get_results.py index 8ef79ee..0a0b83c 100755 --- a/mcsm_na/run_get_results.py +++ b/mcsm_na/run_get_results.py @@ -21,8 +21,12 @@ datadir = homedir + '/git/Data' indir = datadir + '/' + drug + '/input' outdir = datadir + '/' + drug + '/output' +#============================================================================== +# batch 26: 25.txt, RETRIEVED: 16 Feb: +my_url_file = outdir + '/mcsm_na_temp/mcsm_na_result_url_gid_b26.txt' +my_suffix = 'gid_b26' - +#============================================================================== #========================== # CALL: get_results() @@ -34,4 +38,4 @@ get_results(url_file = my_url_file , host_url = my_host , output_dir = outdir , outfile_suffix = my_suffix) -#%%##################################################################### \ No newline at end of file +#%%##################################################################### diff --git a/mcsm_na/run_submit.py b/mcsm_na/run_submit.py index 5519795..249aba5 100755 --- a/mcsm_na/run_submit.py +++ b/mcsm_na/run_submit.py @@ -25,10 +25,13 @@ outdir = datadir + '/' + drug + '/output' my_nuc_type = 'RNA' my_pdb_file = indir + '/gid_complex.pdb' + #============================================================================= -# batch 6: 05.txt # RAN: 15 Feb: 16:43 -my_mutation_list = outdir + '/snp_batches/20/snp_batch_05.txt' -my_suffix = 'gid_b6' +# batch 26: 25.txt # RAN: 16 Feb: +my_mutation_list = outdir + '/snp_batches/20/snp_batch_25.txt' +my_suffix = 'gid_b26' +#============================================================================== + #========================== # CALL: submit_mcsm_na() # Data: gid+streptomycin