From ccc7dd7bf2be74f73097457f1932ed7ef240ba19 Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Wed, 10 Aug 2022 14:06:47 +0100
Subject: [PATCH] added csv for all colnames

---
 scripts/plotting/plotting_thesis/colnames.csv | 156 ++++++++++++++++++
 .../plotting_thesis/colnames_short.csv        |  99 +++++++++++
 2 files changed, 255 insertions(+)
 create mode 100644 scripts/plotting/plotting_thesis/colnames.csv
 create mode 100644 scripts/plotting/plotting_thesis/colnames_short.csv

diff --git a/scripts/plotting/plotting_thesis/colnames.csv b/scripts/plotting/plotting_thesis/colnames.csv
new file mode 100644
index 0000000..f974081
--- /dev/null
+++ b/scripts/plotting/plotting_thesis/colnames.csv
@@ -0,0 +1,156 @@
+"colnames(merged_df3)"
+"mutationinformation"
+"id"
+"sample"
+"lineage"
+"sublineage"
+"country_code"
+"drtype"
+"ethambutol"
+"mutation"
+"drug_name"
+"mutation_info"
+"mutation_info_orig"
+"mutation_info_v1"
+"wild_type"
+"mutant_type"
+"position"
+"Mut"
+"Mut_copy"
+"index_orig"
+"index_orig_copy"
+"snp_frequency"
+"pos_count"
+"wt_prop_water"
+"mut_prop_water"
+"wt_prop_polarity"
+"mut_prop_polarity"
+"wt_calcprop"
+"mut_calcprop"
+"total_id_ucount"
+"maf"
+"drtype_numeric"
+"drtype_all_vals"
+"drtype_all_names"
+"drtype_multimode"
+"drtype_mode"
+"drtype_max"
+"mutation_info_labels"
+"dm_om_numeric"
+"dm_om_numeric_orig"
+"dst"
+"dst_multimode"
+"dst_mode"
+"mutation_info_labels_v1"
+"mutation_info_labels_orig"
+"lineage_list_all"
+"lineage_count_all"
+"lineage_count_unique"
+"lineage_list_unique"
+"lineage_multimode"
+"chain"
+"ligand_id"
+"ligand_distance"
+"duet_stability_change"
+"duet_outcome"
+"ligand_affinity_change"
+"ligand_outcome"
+"duet_scaled"
+"affinity_scaled"
+"wild_pos"
+"wild_chain_pos"
+"ddg_foldx"
+"contacts"
+"electro_rr"
+"electro_mm"
+"electro_sm"
+"electro_ss"
+"disulfide_rr"
+"disulfide_mm"
+"disulfide_sm"
+"disulfide_ss"
+"hbonds_rr"
+"hbonds_mm"
+"hbonds_sm"
+"hbonds_ss"
+"partcov_rr"
+"partcov_mm"
+"partcov_sm"
+"partcov_ss"
+"vdwclashes_rr"
+"vdwclashes_mm"
+"vdwclashes_sm"
+"vdwclashes_ss"
+"volumetric_rr"
+"volumetric_mm"
+"volumetric_sm"
+"volumetric_ss"
+"foldx_scaled"
+"foldx_outcome"
+"deepddg"
+"deepddg_outcome"
+"deepddg_scaled"
+"asa"
+"rsa"
+"ss"
+"ss_class"
+"kd_values"
+"rd_values"
+"wt_3upper"
+"consurf_score"
+"consurf_scaled"
+"consurf_colour"
+"consurf_colour_rev"
+"consurf_ci_upper"
+"consurf_ci_lower"
+"consurf_ci_colour"
+"consurf_msa_data"
+"consurf_aa_variety"
+"snap2_score"
+"snap2_scaled"
+"snap2_accuracy_pc"
+"snap2_outcome"
+"af"
+"beta_logistic"
+"or_logistic"
+"pval_logistic"
+"se_logistic"
+"zval_logistic"
+"ci_low_logistic"
+"ci_hi_logistic"
+"or_mychisq"
+"log10_or_mychisq"
+"or_fisher"
+"pval_fisher"
+"neglog_pval_fisher"
+"ci_low_fisher"
+"ci_hi_fisher"
+"est_chisq"
+"pval_chisq"
+"ddg_dynamut2"
+"ddg_dynamut2_scaled"
+"ddg_dynamut2_outcome"
+"mcsm_ppi2_affinity"
+"mcsm_ppi2_scaled"
+"mcsm_ppi2_outcome"
+"interface_dist"
+"mut_3upper"
+"seq_offset4pdb"
+"provean_score"
+"provean_outcome"
+"provean_scaled"
+"mmcsm_lig"
+"mmcsm_lig_scaled"
+"mmcsm_lig_outcome"
+"gene_name"
+"pdb_file"
+"lineage_labels"
+"consurf_outcome"
+"sensitivity"
+"foldx_scaled_signC"
+"avg_stability"
+"avg_stability_outcome"
+"avg_stability_scaled"
+"avg_lig_affinity"
+"avg_lig_affinity_outcome"
+"avg_lig_affinity_scaled"
diff --git a/scripts/plotting/plotting_thesis/colnames_short.csv b/scripts/plotting/plotting_thesis/colnames_short.csv
new file mode 100644
index 0000000..bb964e7
--- /dev/null
+++ b/scripts/plotting/plotting_thesis/colnames_short.csv
@@ -0,0 +1,99 @@
+"mutationinformation"
+"id"
+"lineage"
+"drtype"
+drug
+"mutation"
+"drug_name"
+"mutation_info"
+#"mutation_info_orig"
+#"mutation_info_v1"
+#"wild_type"
+#"mutant_type"
+#"position"
+#"Mut"
+"snp_frequency"
+"pos_count"
+"total_id_ucount"
+"maf"
+"drtype_mode"
+"drtype_max"
+"mutation_info_labels"
+"dst"
+"dst_mode"
+#"mutation_info_labels_v1"
+#"mutation_info_labels_orig"
+"lineage_count_all"
+"lineage_count_unique"
+"chain"
+"ligand_id"
+LigDist_colname
+"duet_stability_change"
+"duet_outcome"
+"ligand_affinity_change"
+"ligand_outcome"
+"duet_scaled"
+"affinity_scaled"
+"wild_pos"
+"wild_chain_pos"
+"ddg_foldx"
+"foldx_scaled"
+"foldx_outcome"
+"deepddg"
+"deepddg_outcome"
+"deepddg_scaled"
+"asa"
+"rsa"
+"ss"
+"ss_class"
+"kd_values"
+"rd_values"
+"wt_3upper"
+"consurf_score"
+"consurf_scaled"
+"consurf_colour"
+"consurf_colour_rev"
+"consurf_ci_upper"
+"consurf_ci_lower"
+"consurf_ci_colour"
+"consurf_msa_data"
+"consurf_aa_variety"
+"snap2_score"
+"snap2_scaled"
+"snap2_accuracy_pc"
+"snap2_outcome"
+"af"
+"or_logistic"
+"pval_logistic"
+"or_mychisq"
+"log10_or_mychisq"
+"or_fisher"
+"pval_fisher"
+"neglog_pval_fisher"
+"ddg_dynamut2"
+"ddg_dynamut2_scaled"
+"ddg_dynamut2_outcome"
+"mcsm_ppi2_affinity"
+"mcsm_ppi2_scaled"
+"mcsm_ppi2_outcome"
+ppi2Dist_colname
+"mut_3upper"
+"seq_offset4pdb"
+"provean_score"
+"provean_outcome"
+"provean_scaled"
+"mmcsm_lig"
+"mmcsm_lig_scaled"
+"mmcsm_lig_outcome"
+"gene_name"
+"pdb_file"
+"lineage_labels"
+"consurf_outcome"
+"sensitivity"
+"foldx_scaled_signC"
+"avg_stability"
+"avg_stability_outcome"
+"avg_stability_scaled"
+"avg_lig_affinity"
+"avg_lig_affinity_outcome"
+"avg_lig_affinity_scaled"