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ran b9 and b10 for gid after Dynamut team reran due to server issues

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This commit is contained in:
Tanushree Tunstall 2021-08-12 10:06:43 +01:00
parent cf0db2a9c0
commit ca07351086
2 changed files with 11 additions and 10 deletions
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19
dynamut/run_get_results_dynamut.py
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@ -22,28 +22,29 @@ drug = 'streptomycin'
datadir = homedir + '/git/Data/'
indir = datadir + drug + '/input/'
outdir = datadir + drug + '/output/'
outdir_dynamut_temp = datadir + drug + '/output/dynamut_results/dynamut_temp/'
outdir_dynamut_temp = outdir + 'dynamut_results/dynamut_temp/'
#==============================================================================
# batch 8: 08.txt, # RETRIEVED 23 Feb 08:54
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b8.txt'
#my_suffix = 'gid_b7'
#b09 and b10 failed!
#b09 and b10 failed, ran by Carlos, and returned results on 12 Aug
# batch 9: 09.txt,
my_url_file = outdir_dynamut_temp + 'dynamut_result_url_gid_b10_ab.txt'
my_suffix = 'gid_b10_ab'
# batch 9 and 10: RETRIEVED 12 Aug 09:25
my_url_file = outdir_dynamut_temp + 'dynamut_result_url_gid_b10.txt'
my_suffix = 'gid_b10'
#==============================================================================
#==========================
# CALL: get_results()
# Data: gid+streptomycin
#==========================
print(my_url_file, 'suffix:', my_suffix)
# output file saves in dynamut_results/ (created if it doesn't exist) inside outdir
print('Fetching results from url file :', my_url_file, '\nsuffix:', my_suffix)
get_results(url_file = my_url_file
, host_url = my_host
, output_dir = outdir
, outfile_suffix = my_suffix)
, host_url = my_host
, output_dir = outdir
, outfile_suffix = my_suffix)
########################################################################