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added functions for bp with stat and tested them

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Tanushree Tunstall 2021-08-27 14:05:00 +01:00
parent 873049b603
commit c8e21b928c
4 changed files with 103 additions and 105 deletions
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scripts/functions/test_lf_bp_with_stats.R Normal file
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setwd("~/git/LSHTM_analysis/scripts/plotting/")
source("../functions/lf_bp_with_stats.R")
######################
# call function
######################
# Note: Data
# run other_plots_data.R
# to get the long format data to test this function
lf_bp_with_stats(lf_df = lf_dynamut2
, x_grp = "mutation_info"
, y_var = "param_value"
, facet_var = "param_type"
, n_facet_row = 1
, y_scales = "free_y"
, p_title = "Dynamut2"
, colour_categ = "ddg_dynamut2_outcome"
, stat_grp_comp = c("DM", "OM")
, stat_method = "wilcox.test"
, my_paired = FALSE
#, stat_label = "p.format")
, stat_label = c("p.format", "p.signif")
, my_ats = 22 # axis text size
, my_als = 20 # axis label size
, my_fls = 20 # facet label size
, my_pts = 22 )# plot title size