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minor tidy up to check interactive graphs Rshiny

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This commit is contained in:
Tanushree Tunstall 2022-01-07 16:07:44 +00:00
parent 7d60a09297
commit c48fa1dbb0
6 changed files with 3 additions and 375 deletions
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8
scripts/plotting/get_plotting_dfs.R
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@ -5,10 +5,9 @@
#########################################################
# working dir and loading libraries
getwd()
setwd("~/git/LSHTM_analysis/scripts/plotting")
getwd()
#setwd("~/git/LSHTM_analysis/scripts/plotting")
source("Header_TT.R")
source("/home/tanu/git/LSHTM_analysis/scripts/plotting/Header_TT.R")
#********************
# cmd args passed
@ -36,8 +35,7 @@ import_dirs(drug, gene)
#---------------------------
if (!exists("infile_params") && exists("gene")){
#if (!is.character(infile_params) && exists("gene")){ # when running as cmd
in_filename_params = paste0(tolower(gene), "_all_params.csv") #for pncA (and for gid finally) 10/09/21
#in_filename_params = paste0(tolower(gene), "_comb_afor.csv") # part combined for gid
in_filename_params = paste0(tolower(gene), "_all_params.csv")
infile_params = paste0(outdir, "/", in_filename_params)
cat("\nInput file for mcsm comb data not specified, assuming filename: ", infile_params, "\n")
}