From c2a4e1b0ecf1023b6851c8bfe8bdb8e69b8efde0 Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Fri, 27 Mar 2020 17:08:33 +0000 Subject: [PATCH] saving work for the day --- mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R | 2 +- mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R b/mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R index 44062eb..f60fb0b 100644 --- a/mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R +++ b/mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R @@ -164,7 +164,7 @@ chemistry = data.frame( # uncomment as necessary my_type = "EDLogo" -my_type = "Logo" +#my_type = "Logo" logomaker(tab_mt , type = my_type diff --git a/mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R b/mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R index 895eee1..80f1971 100644 --- a/mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R +++ b/mcsm_analysis/pyrazinamide/scripts/plotting/snp_logo_plot.R @@ -53,6 +53,7 @@ source("../combining_two_df.R") #%%%%%%%%%%%%%%%%%%%%%%%% # REASSIGNMENT my_df = merged_df3 # to show multiple mutations per site +my_df = read.csv(file.choose()) #%%%%%%%%%%%%%%%%%%%%%%%% rm(merged_df2, merged_df2_comp, merged_df3, merged_df3_comp)