diff --git a/foldx/runFoldx.py b/foldx/runFoldx.py index 50ea562..ed50594 100755 --- a/foldx/runFoldx.py +++ b/foldx/runFoldx.py @@ -110,7 +110,7 @@ infile_muts = outdir + '/' + mutation_file #======= # output #======= -out_filename = gene.lower() + '_foldx_results.csv' +out_filename = gene.lower() + '_foldx.csv' outfile_foldx = outdir + '/' + out_filename print('Arguments being passed:' diff --git a/scripts/or_kinship_link.py b/scripts/or_kinship_link.py index 5d4bc6b..f248b0b 100755 --- a/scripts/or_kinship_link.py +++ b/scripts/or_kinship_link.py @@ -52,15 +52,14 @@ gene = args.gene drug = args.drug gene_match = gene + '_p.' -datadir = args.datadir +datadir = args.datadir indir = args.input_dir outdir = args.output_dir start_cds = args.start_coord end_cds = args.end_coord -#======================================================================= -#%% input and output dirs and files +#%%======================================================================= #============== # directories #============== @@ -464,7 +463,7 @@ else: #%% write file print('\n=====================================================================' , '\nWriting output file:\n', outfile_or_kin - , '\nNo.of rows:', len(dfm2_mis) + , '\nNo. of rows:', len(dfm2_mis) , '\nNo. of cols:', len(dfm2_mis.columns)) orkin_linked.to_csv(outfile_or_kin, index = False)