diff --git a/scripts/functions/corr_plot_data.R b/scripts/functions/corr_plot_data.R index 12945fc..c456950 100644 --- a/scripts/functions/corr_plot_data.R +++ b/scripts/functions/corr_plot_data.R @@ -25,7 +25,7 @@ corr_data_extract <- function(df #, gene_name = gene , drug_name = drug - , ligand_dist_colname = LigDist_colname + #, ligand_dist_colname = LigDist_colname , colnames_to_extract , colnames_display_key , extract_scaled_cols = F){ @@ -43,11 +43,13 @@ corr_data_extract <- function(df colnames_to_extract = c(drug #, "mutationinformation" - , "mutation_info_labels" + #, "mutation_info_labels" + , "dst_mode" , "duet_stability_change" , "ligand_affinity_change" - #, "ligand_distance" - , ligand_dist_colname + , "ligand_distance" + #, ligand_dist_colname + , "interface_dist" , "ddg_foldx" , "deepddg" , "asa" @@ -80,8 +82,9 @@ corr_data_extract <- function(df # arg: colnames_display_key colnames_display_key = c(duet_stability_change = "DUET" , ligand_affinity_change = "mCSM-lig" - #, ligand_distance = "ligand_distance" + , ligand_distance = "ligand_distance" #, ligand_dist_colname = "ligand_distance" + , interface_dist = "interface_dist" , ddg_foldx = "FoldX" , deepddg = "DeepDDG" , asa = "ASA" @@ -122,9 +125,11 @@ corr_data_extract <- function(df # Move drug column to the end last_col = colnames(corr_df[ncol(corr_df)]) - corr_df_f = corr_df %>% dplyr::relocate(all_of(drug), .after = last_col) + #corr_df_f = corr_df %>% dplyr::relocate(all_of(drug), .after = last_col) + + #return(corr_df_f) + return(corr_df) - return(corr_df_f) } } diff --git a/scripts/functions/my_pairs_panel.R b/scripts/functions/my_pairs_panel.R index 7928fd5..93f6778 100644 --- a/scripts/functions/my_pairs_panel.R +++ b/scripts/functions/my_pairs_panel.R @@ -12,7 +12,7 @@ my_corr_pairs <- function (corr_data_all { corr_data_df = corr_data_all[corr_cols] - my_bg = categ_colour[corr_data_all[[colour_categ_col]] ] + my_bg = categ_colour[as.factor(corr_data_all[[colour_categ_col]])] # converted to factor OutPlot_corr = pairs.panels(corr_data_df , method = corr_method