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`resolved ambiguous muts and generated clean output. Also seaprated dir.R

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Tanushree Tunstall 2020-09-09 11:26:13 +01:00
parent 46b43cf261
commit b7c7ffc018
5 changed files with 49 additions and 23 deletions
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scripts/data_extraction.py
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@ -1170,7 +1170,7 @@ del(out_filename_metadata_poscounts)
#%% Write file: gene_metadata (i.e gene_LF1)
# where each row has UNIQUE mutations NOT unique sample ids
out_filename_metadata = gene.lower() + '_metadata.csv'
out_filename_metadata = gene.lower() + '_metadata_raw.csv'
outfile_metadata = outdir + '/' + out_filename_metadata
print('Writing file: LF formatted data'
, '\nFile:', outfile_metadata