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just tested logo plot msa with embb after correcting the OMINOUS fasta file

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Tanushree Tunstall 2022-01-19 18:57:04 +00:00
parent 59eaf58747
commit b72ffb5d2c
3 changed files with 7 additions and 6 deletions
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scripts/plotting/logo_data_msa.R
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@ -39,7 +39,7 @@ head(msa_seq)
#================
#in_filename_fasta = paste0(tolower(gene), ".1fasta")
in_filename_fasta = paste0(tolower(gene), "2.2fasta") # gid
in_filename_fasta = paste0(tolower(gene), "2_f2.fasta") # gid
infile_fasta = paste0(indir, "/", in_filename_fasta)
cat("\nInput fasta file for WT: ", infile_fasta, "\n")