adding scripts for struct params

meta_data_analysis/kd.py

@@ -0,0 +1,20 @@
+#!/usr/bin/python
+
+# hydrophobicity and SAA
+#https://biopython.org/DIST/docs/api/Bio.SeqUtils.ProtParamData-pysrc.html
+#https://jbloomlab.github.io/dms_tools2/dms_tools2.dssp.html
+import sys, os
+import pandas as pd
+import pprint as pp
+#import dms_tools2
+#import dms_tools2.dssp
+
+from Bio.SeqUtils import ProtParamData
+#%%
+homedir = os.path.expanduser('~') # spyder/python doesn't recognise tilde
+os.getcwd()
+os.chdir(homedir + '/git/LSHTM_analysis/meta_data_analysis/struct_params')
+os.getcwd()
+#%%
+
+foo = ProtParamData.kd(3pl1.pdb)