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Combining dfs for PS and lig in one

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This commit is contained in:
Tanushree Tunstall 2020-09-07 14:05:46 +01:00
parent 2ef767f046
commit b4affa0c94
6 changed files with 464 additions and 621 deletions
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scripts/plotting/lineage_count.txt Normal file
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#=============
# merged_df2
#=============
----------------
# no. of samples
----------------
Var1 Freq
1 8
2 lineage1 144
3 lineage1;lineage2 3
4 lineage1;lineage4 4
5 lineage2 1886
6 lineage2;lineage4 19
7 lineage3 190
8 lineage3;lineage4 11
9 lineage4 2213
10 lineage4;lineage6 1
11 lineage4;lineage7 1
12 lineage4;lineageBOV 1
13 lineage5 31
14 lineage6 9
15 lineage7 3
16 lineageBOV 392
----------------
# no. of nsSNPs
----------------
sel_lineages num_snps_u total_samples
1 lineage1 74 144
2 lineage2 277 1886
3 lineage3 104 190
4 lineage4 311 2213
5 lineage5 18 31
6 lineage6 8 9
7 lineage7 1 3
#=============
# merged_df2_comp
#=============
----------------
# no. of samples
----------------
Var1 Freq
1 3
2 lineage1 108
3 lineage1;lineage2 2
4 lineage1;lineage4 2
5 lineage2 1497
6 lineage2;lineage4 13
7 lineage3 154
8 lineage3;lineage4 3
9 lineage4 1846
10 lineage4;lineageBOV 1
11 lineage5 12
12 lineage6 2
13 lineageBOV 36
----------------
# no. of nsSNPs
----------------
sel_lineages num_snps_u total_samples
1 lineage1 42 108
2 lineage2 141 1497
3 lineage3 75 154
4 lineage4 148 1846
5 lineage5 9 12
6 lineage6 2 2
7 lineage7 0 0