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added cm run for logo_skf for actual data

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Tanushree Tunstall 2022-07-02 16:57:11 +01:00
parent 9071a87056
commit b2d0b827ad
4 changed files with 56 additions and 124 deletions
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6
scripts/ml/ml_iterator.py
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@ -48,11 +48,7 @@ for gene, drug in ml_gene_drugD.items():
, '\nDrug:', drug)
gene_low = gene.lower()
gene_dataD[gene_low] = getmldata(gene, drug
, data_combined_model = False # this means it doesn't include 'gene_name' as a feauture as a single gene-target shouldn't have it.
, use_or = False
, omit_all_genomic_features = False
, write_maskfile = False
, write_outfile = False)
, **combined_model_paramD)
for split_type in split_types:
for data_type in split_data_types: